Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00370X
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                     91   4e-19
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_6283| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   4.7  
SB_59222| Best HMM Match : Filament (HMM E-Value=0.95)                 28   6.2  
SB_44933| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-25)               27   8.2  

>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = +3

Query: 90  LLDSLHEEGKLTSMSLWVELYPVISADMRFSAMLGQSGSTPLDLFKFYVENLKAR 254
           LLD LH++GKL SMSLW +LYP I +D+RFS +LGQ GSTPLDLFKFYVE+LKAR
Sbjct: 477 LLDELHKKGKLHSMSLWCDLYPTIGSDVRFSNLLGQPGSTPLDLFKFYVEDLKAR 531



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/57 (43%), Positives = 41/57 (71%)
 Frame = +2

Query: 299 NFEVKPETTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQ 469
           N  V  +++F +F+ +V  D +SA+LD GN+K+ +N L+EKAE R+KE+ K+E K +
Sbjct: 547 NITVDTDSSFSDFSELVQCDKRSATLDPGNIKMAFNHLIEKAEAREKERQKKEEKEE 603


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 386 NVKLTYNSLLEKAETRKKEKLKEESKAQKKIESAF-KWALSDQTSTTCSRGARLRRNLTL 562
           N ++T + L        KE++     A + ++  F +W+     S TC++G+R RR L  
Sbjct: 166 NCRVTIDELAVWLRVLPKEEICYVQNA-RAVDGGFAEWSDFTSCSVTCAQGSRTRRRLCT 224

Query: 563 NAP 571
           + P
Sbjct: 225 SPP 227


>SB_6283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 353 EDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIESAFK 493
           EDS +  ++  N       L +    RKK++ K++SK+ K  + + K
Sbjct: 143 EDSHTVQVNTKNANAANKKLAKNITKRKKDRTKKQSKSGKTRKKSIK 189


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 383 GNVKLTYNSLLEKAETRKKEKLKEESKAQKKIES--AFKWALSDQTSTTCSRGARLRRNL 556
           G+++  Y  L    E +KKE + E  K Q++I+     K +L DQ   +     RL+  L
Sbjct: 63  GDMEAAYRQLKAMLEDQKKEHMAEVRKFQREIDDLRRQKRSLEDQLRDSKGDNKRLQDEL 122

Query: 557 TL 562
            +
Sbjct: 123 NM 124


>SB_59222| Best HMM Match : Filament (HMM E-Value=0.95)
          Length = 411

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +2

Query: 392 KLTYNSLLEKAETRKKEKLKEESKAQKKIESAFKWALSDQT 514
           ++ +  +LEK     K++LKE  + ++K E  FK A+++++
Sbjct: 157 EVEFRRILEKELEGSKQQLKEYFEEREKAEVGFKQAIAEKS 197


>SB_44933| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-25)
          Length = 462

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +2

Query: 392 KLTYNSLLEKAETRKKEKLKEESKAQKKIESAFKWALSDQTSTTCSRGARLRRN 553
           +LT     +    +  E+LKE+ K Q K E   K  LSD      S+   L  N
Sbjct: 242 QLTTRQSQDHVIQKLSEQLKEQKKHQSKFEKEIKAKLSDLEKKESSKECSLFSN 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,416,670
Number of Sequences: 59808
Number of extensions: 161656
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)