Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00370X
(573 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC067364-1|AAH67364.1| 871|Homo sapiens PRP40 pre-mRNA processi... 91 3e-18
BC050398-1|AAH50398.1| 788|Homo sapiens PRPF40B protein protein. 91 3e-18
AF155096-1|AAD42862.1| 427|Homo sapiens NY-REN-6 antigen protein. 90 6e-18
AK027117-1|BAB15662.1| 347|Homo sapiens protein ( Homo sapiens ... 76 8e-14
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio... 33 0.94
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ... 33 0.94
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio... 33 0.94
AY043484-1|AAK95360.1| 1998|Homo sapiens voltage-gated sodium ch... 30 6.7
AF225985-1|AAK00217.1| 1999|Homo sapiens voltage-gated sodium ch... 30 6.7
AC010127-1|AAX81984.1| 1998|Homo sapiens unknown protein. 30 6.7
AB098335-1|BAC45228.1| 1981|Homo sapiens Voltage-gated sodium ch... 30 6.7
AB093549-1|BAC21102.1| 1998|Homo sapiens Voltage-gated sodium ch... 30 6.7
AB093548-1|BAC21101.1| 2009|Homo sapiens voltage-gated sodium ch... 30 6.7
>BC067364-1|AAH67364.1| 871|Homo sapiens PRP40 pre-mRNA processing
factor 40 homolog B (S. cerevisiae) protein.
Length = 871
Score = 91.1 bits (216), Expect = 3e-18
Identities = 41/58 (70%), Positives = 46/58 (79%)
Frame = +3
Query: 81 FLALLDSLHEEGKLTSMSLWVELYPVISADMRFSAMLGQSGSTPLDLFKFYVENLKAR 254
F LD LHE G+L SMS W+ELYP +S D+RF+ MLGQ GSTPLDLFKFYVE LKAR
Sbjct: 497 FQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKAR 554
Score = 76.2 bits (179), Expect = 8e-14
Identities = 34/64 (53%), Positives = 51/64 (79%)
Frame = +2
Query: 302 FEVKPETTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIE 481
F V+ T FE+FA V+ D ++A+LDAGN+KLT+NSLLEKAE R++E+ KEE++ ++ E
Sbjct: 571 FCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRRE 630
Query: 482 SAFK 493
+AF+
Sbjct: 631 AAFR 634
>BC050398-1|AAH50398.1| 788|Homo sapiens PRPF40B protein protein.
Length = 788
Score = 91.1 bits (216), Expect = 3e-18
Identities = 41/58 (70%), Positives = 46/58 (79%)
Frame = +3
Query: 81 FLALLDSLHEEGKLTSMSLWVELYPVISADMRFSAMLGQSGSTPLDLFKFYVENLKAR 254
F LD LHE G+L SMS W+ELYP +S D+RF+ MLGQ GSTPLDLFKFYVE LKAR
Sbjct: 497 FQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKAR 554
Score = 76.2 bits (179), Expect = 8e-14
Identities = 34/64 (53%), Positives = 51/64 (79%)
Frame = +2
Query: 302 FEVKPETTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIE 481
F V+ T FE+FA V+ D ++A+LDAGN+KLT+NSLLEKAE R++E+ KEE++ ++ E
Sbjct: 571 FCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRRE 630
Query: 482 SAFK 493
+AF+
Sbjct: 631 AAFR 634
>AF155096-1|AAD42862.1| 427|Homo sapiens NY-REN-6 antigen protein.
Length = 427
Score = 89.8 bits (213), Expect = 6e-18
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = +3
Query: 75 DNFLALLDSLHEEGKLTSMSLWVELYPVISADMRFSAMLGQSGSTPLDLFKFYVENLKAR 254
++F LD LHE G+L SMS W+ELYP IS+D+RF+ MLGQ GST LDLFKFYVE+LKAR
Sbjct: 71 ESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKAR 130
Score = 77.4 bits (182), Expect = 3e-14
Identities = 34/64 (53%), Positives = 48/64 (75%)
Frame = +2
Query: 302 FEVKPETTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIE 481
F V+ TTFE+F ++ +S +LDAGN+KL +NSLLEKAE R++E+ KEE++ K+ E
Sbjct: 147 FVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKE 206
Query: 482 SAFK 493
SAFK
Sbjct: 207 SAFK 210
>AK027117-1|BAB15662.1| 347|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23464 fis, clone HSI09275. ).
Length = 347
Score = 76.2 bits (179), Expect = 8e-14
Identities = 34/64 (53%), Positives = 51/64 (79%)
Frame = +2
Query: 302 FEVKPETTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIE 481
F V+ T FE+FA V+ D ++A+LDAGN+KLT+NSLLEKAE R++E+ KEE++ ++ E
Sbjct: 67 FCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRRE 126
Query: 482 SAFK 493
+AF+
Sbjct: 127 AAFR 130
Score = 36.7 bits (81), Expect = 0.058
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 204 STPLDLFKFYVENLKAR 254
STPLDLFKFYVE LKAR
Sbjct: 34 STPLDLFKFYVEELKAR 50
>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
regulator 1 protein.
Length = 1077
Score = 32.7 bits (71), Expect = 0.94
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 314 PETTFEEFATVVCEDSKSASLD-AGNVKLTYNSLLEKAETRKKEKLKEESKAQ-KKIESA 487
P TF EFA +DS+ +++ + + +N + A RKKE KE+SK + +KI+S
Sbjct: 722 PRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFV--AAARKKE--KEDSKTRGEKIKSD 777
Query: 488 FKWALSDQTSTTCSRGARLR 547
F LS+ + SR ++++
Sbjct: 778 FFELLSNHHLDSQSRWSKVK 797
>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
factor CA150 protein.
Length = 1098
Score = 32.7 bits (71), Expect = 0.94
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 314 PETTFEEFATVVCEDSKSASLD-AGNVKLTYNSLLEKAETRKKEKLKEESKAQ-KKIESA 487
P TF EFA +DS+ +++ + + +N + A RKKE KE+SK + +KI+S
Sbjct: 743 PRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFV--AAARKKE--KEDSKTRGEKIKSD 798
Query: 488 FKWALSDQTSTTCSRGARLR 547
F LS+ + SR ++++
Sbjct: 799 FFELLSNHHLDSQSRWSKVK 818
>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
regulator 1 variant protein.
Length = 1081
Score = 32.7 bits (71), Expect = 0.94
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 314 PETTFEEFATVVCEDSKSASLD-AGNVKLTYNSLLEKAETRKKEKLKEESKAQ-KKIESA 487
P TF EFA +DS+ +++ + + +N + A RKKE KE+SK + +KI+S
Sbjct: 726 PRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFV--AAARKKE--KEDSKTRGEKIKSD 781
Query: 488 FKWALSDQTSTTCSRGARLR 547
F LS+ + SR ++++
Sbjct: 782 FFELLSNHHLDSQSRWSKVK 801
>AY043484-1|AAK95360.1| 1998|Homo sapiens voltage-gated sodium
channel type I protein.
Length = 1998
Score = 29.9 bits (64), Expect = 6.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 392 KLTYNSLLEKAETRKKEKLKEESKAQKKIESAFKWALSDQT 514
KL+ S E+ RKK K KE+S ++K E F+ + S+ +
Sbjct: 488 KLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFQKSESEDS 528
>AF225985-1|AAK00217.1| 1999|Homo sapiens voltage-gated sodium
channel alpha subunit SCN1A protein.
Length = 1999
Score = 29.9 bits (64), Expect = 6.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 392 KLTYNSLLEKAETRKKEKLKEESKAQKKIESAFKWALSDQT 514
KL+ S E+ RKK K KE+S ++K E F+ + S+ +
Sbjct: 488 KLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFQKSESEDS 528
>AC010127-1|AAX81984.1| 1998|Homo sapiens unknown protein.
Length = 1998
Score = 29.9 bits (64), Expect = 6.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 392 KLTYNSLLEKAETRKKEKLKEESKAQKKIESAFKWALSDQT 514
KL+ S E+ RKK K KE+S ++K E F+ + S+ +
Sbjct: 488 KLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFQKSESEDS 528
>AB098335-1|BAC45228.1| 1981|Homo sapiens Voltage-gated sodium
channel alpha 1 subunit protein.
Length = 1981
Score = 29.9 bits (64), Expect = 6.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 392 KLTYNSLLEKAETRKKEKLKEESKAQKKIESAFKWALSDQT 514
KL+ S E+ RKK K KE+S ++K E F+ + S+ +
Sbjct: 488 KLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFQKSESEDS 528
>AB093549-1|BAC21102.1| 1998|Homo sapiens Voltage-gated sodium
channel alpha1 subunit protein.
Length = 1998
Score = 29.9 bits (64), Expect = 6.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 392 KLTYNSLLEKAETRKKEKLKEESKAQKKIESAFKWALSDQT 514
KL+ S E+ RKK K KE+S ++K E F+ + S+ +
Sbjct: 488 KLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFQKSESEDS 528
>AB093548-1|BAC21101.1| 2009|Homo sapiens voltage-gated sodium
channel alpha1 subunit protein.
Length = 2009
Score = 29.9 bits (64), Expect = 6.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 392 KLTYNSLLEKAETRKKEKLKEESKAQKKIESAFKWALSDQT 514
KL+ S E+ RKK K KE+S ++K E F+ + S+ +
Sbjct: 488 KLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFQKSESEDS 528
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,209,578
Number of Sequences: 237096
Number of extensions: 678919
Number of successful extensions: 6879
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6871
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -