Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00370X
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 39 0.003
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc... 31 0.41
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 0.55
At3g48940.1 68416.m05346 remorin family protein contains Pfam do... 31 0.72
At5g17910.1 68418.m02100 expressed protein 28 3.8
At5g10910.1 68418.m01266 mraW methylase family protein contains ... 28 5.1
At5g03670.1 68418.m00326 expressed protein 28 5.1
At4g20880.1 68417.m03028 ethylene-responsive nuclear protein / e... 28 5.1
At2g20070.1 68415.m02345 hypothetical protein weak similarity to... 28 5.1
At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR... 27 6.7
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 27 8.9
At1g70160.1 68414.m08073 expressed protein similar to hypothetic... 27 8.9
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 DNFLALLDSLHEEGKLTSMSLWVELYPVISADMRFSAMLGQS-GSTPLDLFKFYVENLKA 251
D F LLD G+LT+ ++W + + +SA+ S G+TP DLF+ VE+LK
Sbjct: 632 DEFHGLLDEHIATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKK 691
Query: 252 R 254
R
Sbjct: 692 R 692
Score = 33.9 bits (74), Expect = 0.077
Identities = 13/53 (24%), Positives = 34/53 (64%)
Frame = +2
Query: 320 TTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKI 478
+TF+EF + ED + +KL ++ LLE+A+ +++++ +++++ +K+
Sbjct: 715 STFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKEEKEARKQTRQTEKL 767
>At3g13784.1 68416.m01741 beta-fructosidase, putative /
beta-fructofuranosidase, putative / cell wall invertase,
putative similar to beta-fructofuranosidase GI:402740
from [Arabidopsis thaliana]
Length = 569
Score = 31.5 bits (68), Expect = 0.41
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 329 EEFATVVCEDSKSASLDAGNVKLTYNSLLE 418
+E V+C D ++SL+ GN K TY + L+
Sbjct: 471 KEHVVVMCSDQSTSSLEKGNDKTTYGAFLD 500
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 31.1 bits (67), Expect = 0.55
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 75 DNFLALLDSLHEEGKLTSMSLWVELYPVISADM-RFSAMLGQ-SGSTPLDLFKFYVENLK 248
D F LL+ G LT+ + W++ Y + D+ ++ A+ SGSTP DLF+ E L+
Sbjct: 615 DAFRTLLEEHVAAGILTAKTYWLD-YCIELKDLPQYQAVASNTSGSTPKDLFEDVTEELE 673
>At3g48940.1 68416.m05346 remorin family protein contains Pfam
domain, PF03766: Remorin, N-terminal region and Pfam
domain, PF03763: Remorin, C-terminal region
Length = 175
Score = 30.7 bits (66), Expect = 0.72
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 353 EDSKSASL--DAGNVKLTYNSLLEKAET-RKKEKLKEESKAQKKIESAFKWALSDQTS 517
ED K S+ DA V+L + + + + EK K E+KAQKKI S W S + S
Sbjct: 45 EDKKVGSVHRDAVLVRLEQDKRISLIKAWEEAEKSKVENKAQKKISSVGAWENSKKAS 102
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 416 EKAETRKKEKLKEESKAQKKIES--AFKWALSDQTSTTCSRGARLRRNLTL 562
E+ E + E+ K+E K K ES A KW +DQ + L RN L
Sbjct: 329 EEDEEEEDEEEKQEKKEDKDDESKSAIKWTEADQRNVMDLGSLELERNQRL 379
>At5g10910.1 68418.m01266 mraW methylase family protein contains
Pfam profile PF01795: MraW methylase family
Length = 434
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 413 LEKAETRKKEKLKEESKAQKKIESAFKWAL--SDQTSTTCSRGARL 544
L +ET+KKEK K + + + ++E A A+ ++ T SRG L
Sbjct: 40 LNSSETKKKEKEKRKRRKEIEVEKATAEAVVNKEKRRTRSSRGYEL 85
>At5g03670.1 68418.m00326 expressed protein
Length = 516
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 353 EDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIESAFK 493
E SK+ + +AGN + S+L+K RKK ++ +A + S+ K
Sbjct: 114 EVSKTRTRNAGNAFGIFGSVLKKLTNRKKREISGGKEAGRVSSSSVK 160
>At4g20880.1 68417.m03028 ethylene-responsive nuclear protein /
ethylene-regulated nuclear protein (ERT2) identical to
ethylene-regulated nuclear protein [Arabidopsis
thaliana] gi|2765442|emb|CAA75349
Length = 405
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 353 EDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIESAFKWALSDQTS 517
E SKSA L + VK L + +KK K KE+ + + ++E+ + ++++ +S
Sbjct: 266 EKSKSAKLKSKIVKKIVPKKLRSYKKKKKMKNKEKEEEEVELETEEEGSMTEVSS 320
>At2g20070.1 68415.m02345 hypothetical protein weak similarity to
SP|O61705 Neurotoxin BmK-X precursor (BmK10)
(Alpha-neurotoxin TX9) {Mesobuthus martensii}
Length = 89
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -3
Query: 220 KSNGV-DPLCPNIAENLMSAEITG 152
+SNG+ DP+CP + NL+ + G
Sbjct: 31 RSNGIYDPMCPGVCGNLVKPDCNG 54
>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1294
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 317 ETTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLK 451
ET+ EE +C S+ SLD K + + +E R EKLK
Sbjct: 817 ETSIEEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEKLK 861
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 356 DSKSASLDAGNVKLTYNSLLEKAE 427
DSK+ + G V LTYNSL+ +E
Sbjct: 343 DSKNVGIKEGVVFLTYNSLIASSE 366
>At1g70160.1 68414.m08073 expressed protein similar to hypothetical
protein GI:4455225 from [Arabidopsis thaliana]
Length = 523
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 120 LTSMSLWVELYPVISADMRFSAMLGQSGSTPLDLFKFYVENLK 248
++ MS+W + P +A+M A+ + G+ LDL+ E +
Sbjct: 357 ISVMSMWTRVQPAYAANMWNEALNKRLGTEDLDLYGILEETAR 399
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,116,093
Number of Sequences: 28952
Number of extensions: 116113
Number of successful extensions: 532
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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