Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00369
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 72 8e-14
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 32 0.076
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.6
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 27 1.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.8
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 26 3.8
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 26 3.8
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 5.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.0
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 6.6
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 6.6
SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase |Schizosac... 25 8.7
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 8.7
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 71.7 bits (168), Expect = 8e-14
Identities = 35/73 (47%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
Frame = -3
Query: 509 LDGSVVVAKVEDL-GDEF--GYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLLTT 339
L+G+++V K+++L G EF GYD + +V++ E G++DP KVVRT L DASGVASL+ T
Sbjct: 492 LEGNLIVGKLKELYGKEFNIGYDIAKDRFVDLNEIGVLDPLKVVRTGLVDASGVASLMGT 551
Query: 338 AEAVICEIPQEKE 300
E I + P+E +
Sbjct: 552 TECAIVDAPEESK 564
Score = 41.9 bits (94), Expect = 7e-05
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = -1
Query: 610 LEQLKTVNSDQATGVEIVMKALRMPCMTIAKNAGLMVLLLLPRWKTL---EMNLG 455
L + T N DQ GVEIV KA+ P TI +NAGL L++ + K L E N+G
Sbjct: 458 LGDIPTNNFDQKLGVEIVRKAITRPAQTILENAGLEGNLIVGKLKELYGKEFNIG 512
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.9 bits (69), Expect = 0.076
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 328 TASAVVS--SDATPLASVRAVRTTFVGSMMPFSIMF-TYSLLRASYPNSSPRSSTLATTT 498
T+S++ S S +TPL S + S S + T SLL +S P+S+P SS +TT
Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTA 300
Query: 499 EPSS 510
+S
Sbjct: 301 TSAS 304
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 448 ASYPNSSPRSSTLATTTEPSSLHFLLLSCMASSELSLQS 564
+S +SSP SS+ TTT PSS S +SS S S
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSS 175
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 81 DRLPSMLKHTLNKI-LSFTAFSIQFRPLNNSKYPFTFVTICIHKCI 215
D LP+ L K+ LSF+ Q RP N +PFT + + +C+
Sbjct: 71 DTLPTSLSINPKKLSLSFSFPLSQKRPFPNFLHPFTGSELSLFRCL 116
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 340 VVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSP 471
++SS LA V + +TF+ ++P S+ + +S AS NSSP
Sbjct: 343 LLSSLEMVLAFVGSTGSTFISFILPGSLYYFFSHKVASPGNSSP 386
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.8
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +1
Query: 319 SQITASAVVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTT 498
S I++S+ SS + S ++ ++ S P S T S +S P+SS SST +++
Sbjct: 305 STISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSS-PSSSSFSSTTSSSK 363
Query: 499 EPSSLHFLLLSCMASSELSLQS 564
SS + S ++S +L S
Sbjct: 364 SSSSFSSTVSSSSSTSSSTLTS 385
Score = 26.2 bits (55), Expect = 3.8
Identities = 24/87 (27%), Positives = 43/87 (49%)
Frame = +1
Query: 307 SCGISQITASAVVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTL 486
S S +++A S+ ++ L+S V ++ S S + + SL +S P++S SS+
Sbjct: 191 STSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSST 250
Query: 487 ATTTEPSSLHFLLLSCMASSELSLQSL 567
+++ SS S ASS S S+
Sbjct: 251 SSSLSSSSS-----SSTASSSSSSSSI 272
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 515 CRLDGSVVVAKVEDLGDEFGYDALNNEYVNM 423
CR+DGS +A +DL D F NEY ++
Sbjct: 670 CRMDGSTSIALRQDLVDNFN----KNEYFDV 696
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -3
Query: 575 HWCRDCNESSEDAMHDNSKKCRLDGSVVVAKVEDLGDEFGYDALNNEYV 429
H+ + + + ED+ KKC +DG + V D + Y A+ +Y+
Sbjct: 32 HFVDEYDPTIEDSYR---KKCEIDGEGALLDVLDTAGQEEYSAMREQYM 77
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 5.0
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +1
Query: 352 DATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRS--STLATTTEPSSLHFLL 525
D T L V + TT VGS + L + YP +S S + L T T SS
Sbjct: 451 DGTVLREVLSNTTTTVGSSGALHVTVVSGLPQVYYPEASLTSFGNFLGTATSYSSASASY 510
Query: 526 LSCMASSELS 555
S S+ LS
Sbjct: 511 PSTSMSASLS 520
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.0
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 328 TASAVVSSDATPLASVRAVRTTFVGSMMP--FSIMFTYSLLRASYPNSSPRSSTLATTTE 501
TAS + S + L+S RA+ + S S + +Y L +++ +SS STL +
Sbjct: 3599 TASGI--SQGSVLSSTRAIESESTASHRSSVLSELSSYDLSTSAFSSSSSEPSTLDYSVS 3656
Query: 502 PSSL 513
SSL
Sbjct: 3657 SSSL 3660
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 174 YPFTFVTICIHKCIQDVHF 230
+ F ++T CIH I VHF
Sbjct: 293 FTFKYITTCIHANIDIVHF 311
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 224 PLYEDHIMPPNHPFHPYLPYHPW 292
P+Y PN+PF P+ P +P+
Sbjct: 266 PVYPSMKDVPNNPFTPFSPINPY 288
>SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 159
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 528 VMHGILRAFITISTPVA*SLLTVLS 602
V+HG++R + PV LLTVL+
Sbjct: 102 VVHGLMRVGLDSGVPVILGLLTVLN 126
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 8.7
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 316 ISQITASAVVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATT 495
I+ I AS + SS T +V +TF + S + T ++ +S+ +S+P S T ++T
Sbjct: 229 INYIGASTLESSSLTN--TVSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSST 286
Query: 496 TEPSS 510
+ S
Sbjct: 287 SSSGS 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,936
Number of Sequences: 5004
Number of extensions: 54902
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -