Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00369
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 88 5e-18
SB_12403| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=7.9) 48 5e-06
SB_23022| Best HMM Match : CUB (HMM E-Value=0) 32 0.42
SB_19250| Best HMM Match : SOCS_box (HMM E-Value=1) 30 1.3
SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_13711| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 29 2.3
SB_1158| Best HMM Match : Toxin_24 (HMM E-Value=0.57) 29 4.0
SB_42438| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 29 4.0
SB_57042| Best HMM Match : WD40 (HMM E-Value=4.9e-09) 28 6.9
SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07) 28 6.9
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0) 27 9.1
SB_20369| Best HMM Match : PRA-PH (HMM E-Value=0.54) 27 9.1
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 27 9.1
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 88.2 bits (209), Expect = 5e-18
Identities = 42/61 (68%), Positives = 50/61 (81%)
Frame = -3
Query: 485 KVEDLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLLTTAEAVICEIPQE 306
+V L + GYDA NN YV+MI+ GIIDPTKVVRTA+TDA+GVASLLTTAE VI E P+E
Sbjct: 171 EVSSLENAMGYDAANNTYVDMIQAGIIDPTKVVRTAITDAAGVASLLTTAETVIVEAPKE 230
Query: 305 K 303
+
Sbjct: 231 E 231
>SB_12403| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=7.9)
Length = 135
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = -1
Query: 616 PVLEQLKTVNSDQATGVEIVMKALRMPCMTIAKNAGLMVLLLLPR 482
P L +K + DQ GV++V KALR PC TIA+NAG+ L++ +
Sbjct: 91 PALNDIKMPSKDQQLGVDLVKKALRKPCQTIAENAGVEAALVVEK 135
>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
Length = 1307
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1
Query: 313 GISQITASAVVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLAT 492
G+ Q ++ +VSS +TP+ + T+ + P SIM + S+L ++ P SS++ T
Sbjct: 949 GVKQTSSKLLVSSHSTPILTSIHRATSTRNVLEPSSIMTSTSILPSTSSWRIPTSSSVTT 1008
Query: 493 TT 498
T
Sbjct: 1009 PT 1010
>SB_19250| Best HMM Match : SOCS_box (HMM E-Value=1)
Length = 252
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 418 KRASLTPQRWCGQP*PMPVVLHHCLLLP 335
K L PQ +C P P+ + H C LLP
Sbjct: 206 KSIVLIPQVYCPHPVPVAIACHRCTLLP 233
>SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 29.9 bits (64), Expect = 1.7
Identities = 24/85 (28%), Positives = 42/85 (49%)
Frame = +1
Query: 328 TASAVVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPS 507
T S + + TP ++ TT +M P++ T SL A YPN +P + TT+P
Sbjct: 26 TPSLAMYPNTTPSPAMYP-NTTQPLAMYPYT---TSSL--AMYPNKTPSLAMYPNTTQPL 79
Query: 508 SLHFLLLSCMASSELSLQSLHQWPD 582
+++ S +A + + SL +P+
Sbjct: 80 AMYPYTTSSLAMNPNTTPSLAMYPN 104
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 448 ASYPNSSPRSSTLATTTEPSSLHFLLLSCMASSELSLQSLHQWPD 582
A YPN++P + TT+P S++ +A + QSL +P+
Sbjct: 380 AMYPNTTPSLAMNPNTTQPLSMNPNTTQSLAMYPYTTQSLFMYPN 424
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 448 ASYPNSSPRSSTLATTTEPSSLHFLLLSCMASSELSLQSLHQWPD 582
A YPN +P + TT+P +++ S +A + + SL +P+
Sbjct: 130 AMYPNKTPSLAMYPNTTQPLAMYPYTTSSLAMNPNTTPSLAMYPN 174
>SB_13711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 391 TFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPSSLHFLLLSCMASSE 549
TFV P S F SLL SY NS+ S++LA+ L + + +A ++
Sbjct: 13 TFVKFRNPSSSFFFTSLLENSYTNSTRTSASLASLRVVGQLEKMAMKAIAVTD 65
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 388 TTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTE 501
T S+MPFSI FT+ P+SS SS + T E
Sbjct: 1421 THLPASVMPFSISFTHPPTPVMQPSSSLTSSVIHTLDE 1458
>SB_1158| Best HMM Match : Toxin_24 (HMM E-Value=0.57)
Length = 497
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 560 CNESSEDAMHDNSKKCRLDGSVVVAKVEDLGDEFGYDALNNEYVNMIEKGIID 402
C S D HD S CR+ S ++ K+E LG LN ++ E+ +D
Sbjct: 410 CGHSFHDQCHDGS--CRICVSHLLDKIEKLGSTLNKGLLNEAADDIHEEEEVD 460
>SB_42438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +1
Query: 310 CGISQITASAVVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLA 489
CG ++ + P+A + A++ G+ MP + + +LL++ + +SSP +
Sbjct: 169 CGKDKVVGIYMERCLEYPIAYISALKAG--GAYMPLELSYPENLLKSIFEDSSP--VAII 224
Query: 490 TTTE-----PSSLHFLLLS 531
TT E PSS+ L+LS
Sbjct: 225 TTDELKSRLPSSVPVLVLS 243
>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
Length = 1241
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = -3
Query: 458 GYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLLTTAEA 330
GYDAL ++Y + + K +DPT+ + TA+ + + +A+L+ T A
Sbjct: 877 GYDALWSKYGSAVGKPWVDPTQNI-TAVVNTT-LATLMNTTVA 917
>SB_57042| Best HMM Match : WD40 (HMM E-Value=4.9e-09)
Length = 707
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 401 PTKVVRTALTDASG-VASLLTTAEAVICEIPQEKEP 297
P KV+ T DA + L+ EAVIC + +E+ P
Sbjct: 635 PLKVLSTKAADADAEIHVLMFDTEAVICHLMREENP 670
>SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07)
Length = 352
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 221 CPLYEDHIMPPNHPFHPYLP 280
C LYE PNHP YLP
Sbjct: 295 CKLYEKAAAIPNHPLRCYLP 314
>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
Length = 591
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 418 SIMFTYSLLRASYPNSSPRSSTLATTTEPSSLHFLLLSCMASSELSLQSLHQWPD 582
+I+ S++ NSSP TTT PS L LS S S +S WP+
Sbjct: 31 TIIIIISIIVVVVINSSPPPPPTTTTTTPS----LSLSTSTSPPFSYKSPDPWPN 81
>SB_20369| Best HMM Match : PRA-PH (HMM E-Value=0.54)
Length = 174
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 545 EDAMHDNSKKCRLDGSVVVAKVEDLGDE 462
ED HD+S L+ V+ A ED+G E
Sbjct: 91 EDEAHDDSYTSNLNNDVLPAGAEDMGSE 118
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 239 HIMPPNHPFHPYLPYHPWG*ALF 307
+ +PP FHP LPY G +F
Sbjct: 616 YFLPPRSLFHPVLPYRAQGKLMF 638
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,262,079
Number of Sequences: 59808
Number of extensions: 413726
Number of successful extensions: 1074
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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