Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00369
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36035-1|AAA28077.1|  568|Caenorhabditis elegans HSP60 protein.        84   7e-17
AC084153-6|AAK84594.1|  568|Caenorhabditis elegans Heat shock pr...    84   7e-17
AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical ...    30   1.1  
U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   3.5  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    29   3.5  
U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>L36035-1|AAA28077.1|  568|Caenorhabditis elegans HSP60 protein.
          Length = 568

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 42/74 (56%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
 Frame = -3

Query: 521 KKCRLDGSVVVAKVE-DLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLL 345
           K   L+ S ++ +V  +    +GYDALN ++V+M E GIIDPTKVVRTAL DASGVASLL
Sbjct: 472 KNAGLEPSSIIDEVTGNSNTSYGYDALNGKFVDMFEAGIIDPTKVVRTALQDASGVASLL 531

Query: 344 TTAEAVICEIPQEK 303
            T E V+ EIP+E+
Sbjct: 532 ATTECVVTEIPKEE 545



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/35 (57%), Positives = 21/35 (60%)
 Frame = -1

Query: 610 LEQLKTVNSDQATGVEIVMKALRMPCMTIAKNAGL 506
           L+  K  N DQ  GV IV KAL  P  TI KNAGL
Sbjct: 442 LKNYKAANEDQQIGVNIVKKALTQPIATIVKNAGL 476


>AC084153-6|AAK84594.1|  568|Caenorhabditis elegans Heat shock
           protein protein 60 protein.
          Length = 568

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 42/74 (56%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
 Frame = -3

Query: 521 KKCRLDGSVVVAKVE-DLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLL 345
           K   L+ S ++ +V  +    +GYDALN ++V+M E GIIDPTKVVRTAL DASGVASLL
Sbjct: 472 KNAGLEPSSIIDEVTGNSNTSYGYDALNGKFVDMFEAGIIDPTKVVRTALQDASGVASLL 531

Query: 344 TTAEAVICEIPQEK 303
            T E V+ EIP+E+
Sbjct: 532 ATTECVVTEIPKEE 545



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/35 (57%), Positives = 21/35 (60%)
 Frame = -1

Query: 610 LEQLKTVNSDQATGVEIVMKALRMPCMTIAKNAGL 506
           L+  K  N DQ  GV IV KAL  P  TI KNAGL
Sbjct: 442 LKNYKAANEDQQIGVNIVKKALTQPIATIVKNAGL 476


>AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical
           protein Y116A8A.6 protein.
          Length = 456

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/58 (34%), Positives = 36/58 (62%)
 Frame = +1

Query: 340 VVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPSSL 513
           +++++ TP+ + R+  +T + + +  +IM      +AS  ++SP SS  ATTTEPS L
Sbjct: 288 ILTTEPTPVTTERSTVSTTISTSLETTIM------QAS--SASPISSKPATTTEPSPL 337


>U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical
           protein M02F4.1 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 366 GIGQGCPHHLCGVNDALFNHVYIFIVEGI-IPKFISKVFHLGNNNRTI 506
           GI QG PH LC  ND   +H +  I   I + + I K+F+  N   +I
Sbjct: 343 GIQQGSPHVLCAKND---DHCFKKIQNTILVTEAIGKIFNRENTAHSI 387


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 221 CPLYEDHIMPPNHPFHPYLPYH 286
           CPL+  H+  P   +H Y+P H
Sbjct: 431 CPLFPSHVAIPKVSWHAYVPRH 452


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 44  LQANYNN*IILTRQTAFYAQTYTKQNTFIHCIFNSI 151
           L + YN+ I   + TA    TY  Q TF   I+N +
Sbjct: 473 LLSGYNSAIQFAKNTATSLSTYNSQTTFAFIIYNQV 508


>U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical
           protein F18F11.1 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 236 DHIMP-PNHPFHPYLPYHPWG*ALFLVEFHRSQLR 337
           + I+P PN P  P      WG  L+L EFH + L+
Sbjct: 148 EKIIPQPNFPVFPLFGAAVWGIVLWLFEFHPTVLQ 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,444,629
Number of Sequences: 27780
Number of extensions: 315994
Number of successful extensions: 925
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)