Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00369
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 84 8e-17
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 80 1e-15
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 77 9e-15
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 64 5e-11
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 61 5e-10
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 60 1e-09
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 60 2e-09
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 58 5e-09
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 58 5e-09
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 55 4e-08
At5g59190.1 68418.m07418 subtilase family protein contains simil... 33 0.15
At5g35390.1 68418.m04206 leucine-rich repeat transmembrane prote... 30 1.1
At5g24010.1 68418.m02821 protein kinase family protein contains ... 29 3.2
At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containi... 29 3.2
At5g28680.1 68418.m03519 protein kinase family protein contains ... 28 4.3
At3g19070.1 68416.m02422 cell wall protein-related similar to ve... 28 4.3
At3g04690.1 68416.m00503 protein kinase family protein contains ... 28 5.7
At5g55820.1 68418.m06956 expressed protein 27 7.5
At5g38990.1 68418.m04717 protein kinase family protein contains ... 27 7.5
At5g08210.1 68418.m00961 expressed protein 27 7.5
At3g47730.1 68416.m05200 ABC transporter family protein AbcA, Di... 27 7.5
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 27 7.5
At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (... 27 9.9
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 27 9.9
At2g39360.1 68415.m04831 protein kinase family protein contains ... 27 9.9
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 83.8 bits (198), Expect = 8e-17
Identities = 41/74 (55%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Frame = -3
Query: 509 LDGSVVVAKV-EDLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLLTTAE 333
++G+VVV K+ E + GYDA EYV+MI+ GIIDP KV+RTAL DA+ V+SLLTT E
Sbjct: 491 VEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLLTTTE 550
Query: 332 AVICEIPQEKEPNP 291
AV+ EIP ++ +P
Sbjct: 551 AVVTEIPTKEVASP 564
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -1
Query: 610 LEQLKTVNSDQATGVEIVMKALRMPCMTIAKNAGL 506
LE+L T N DQ GV+I+ AL+ P TIA NAG+
Sbjct: 457 LEKLSTANFDQKIGVQIIQNALKTPVYTIASNAGV 491
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/70 (51%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Frame = -3
Query: 509 LDGSVVVAKV-EDLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLLTTAE 333
++G+V+V K+ E + GYDA EYV+M++ GIIDP KV+RTAL DA+ V+SLLTT E
Sbjct: 490 VEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTTE 549
Query: 332 AVICEIPQEK 303
AV+ ++P+++
Sbjct: 550 AVVVDLPKDE 559
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -1
Query: 610 LEQLKTVNSDQATGVEIVMKALRMPCMTIAKNAGL 506
LE+L T N DQ GV+I+ AL+ P TIA NAG+
Sbjct: 456 LEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGV 490
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 77.0 bits (181), Expect = 9e-15
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = -3
Query: 506 DGSVVVAKVEDLGD-EFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLLTTAEA 330
DGS+VV K+ + D FG+DA +YV+M++ GIIDP KV+RTALTDA+ V+ LLTT EA
Sbjct: 491 DGSLVVGKLLEQDDCNFGFDAAKGKYVDMVKAGIIDPVKVIRTALTDAASVSLLLTTTEA 550
Query: 329 VICEIPQEKEPN 294
+ E PN
Sbjct: 551 SVLVKADENTPN 562
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -1
Query: 610 LEQLKTVNSDQATGVEIVMKALRMPCMTIAKNAG 509
L+ L+T N DQ GV+IV AL+ P TIA NAG
Sbjct: 456 LDNLQTENEDQRRGVQIVQNALKAPAFTIAANAG 489
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 64.5 bits (150), Expect = 5e-11
Identities = 29/71 (40%), Positives = 46/71 (64%)
Frame = -3
Query: 509 LDGSVVVAKVEDLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLLTTAEA 330
++G VVV K+ E GY+A+ + Y N+ E G+IDP KV R AL +A+ VA ++ T +A
Sbjct: 506 VEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQA 565
Query: 329 VICEIPQEKEP 297
++ + P+ K P
Sbjct: 566 IVVDKPKPKAP 576
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 589 NSDQATGVEIVMKALRMPCMTIAKNAGL 506
++D+ G +IV KAL P IA+NAG+
Sbjct: 479 DADERLGADIVQKALLSPAALIAQNAGV 506
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 61.3 bits (142), Expect = 5e-10
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = -3
Query: 524 SKKCRLDGSVVVAKV-EDLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASL 348
+K +G++V+ KV + +GY+A N+Y +++ GIIDPTKVVR L AS VA
Sbjct: 495 AKNADTNGNIVIEKVLSNKNTMYGYNAAKNQYEDLMLAGIIDPTKVVRCCLEHASSVAQT 554
Query: 347 LTTAEAVICEIPQEKEPNP 291
T++ V+ EI +E +P P
Sbjct: 555 FLTSDCVVVEI-KEIKPRP 572
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 589 NSDQATGVEIVMKALRMPCMTIAKNA 512
N++Q G EI KAL P IAKNA
Sbjct: 473 NTEQKIGAEIFKKALSYPIRLIAKNA 498
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 60.1 bits (139), Expect = 1e-09
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = -3
Query: 524 SKKCRLDGSVVVAKV-EDLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASL 348
+K ++GSVV KV + +FGY+A +Y +++ GIIDPTKVVR L A+ VA
Sbjct: 507 AKNAGVNGSVVSEKVLANDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKT 566
Query: 347 LTTAEAVICEIPQEKEPNP 291
++ V+ EIP E EP P
Sbjct: 567 FLMSDCVVVEIP-EPEPVP 584
Score = 31.9 bits (69), Expect = 0.35
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 589 NSDQATGVEIVMKALRMPCMTIAKNAGL 506
N ++ G EIV +AL P IAKNAG+
Sbjct: 485 NDEEKVGAEIVKRALSYPLKLIAKNAGV 512
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/73 (41%), Positives = 47/73 (64%)
Frame = -3
Query: 509 LDGSVVVAKVEDLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLLTTAEA 330
+DGSVVV K +L GY+A++ +Y +++ GI DP +V R AL +A VA ++ T +A
Sbjct: 494 VDGSVVVQKTRELEWRSGYNAMSGKYEDLLNAGIADPCRVSRFALQNAVSVAGIILTTQA 553
Query: 329 VICEIPQEKEPNP 291
V+ E + K+P P
Sbjct: 554 VLVE--KIKQPKP 564
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 589 NSDQATGVEIVMKALRMPCMTIAKNAGLMVLLLLPRWKTLEMNLG 455
+S + G +IV AL P M IA NAG+ +++ + + LE G
Sbjct: 467 DSYEQIGADIVAMALTAPAMAIATNAGVDGSVVVQKTRELEWRSG 511
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 58.0 bits (134), Expect = 5e-09
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = -3
Query: 524 SKKCRLDGSVVVAKVEDLGD-EFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASL 348
+K ++GSVV KV + +FGY+A +Y +++ GIIDPTKVVR L A+ VA
Sbjct: 511 AKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKT 570
Query: 347 LTTAEAVICEIPQEKEPNP 291
++ V+ EI +E EP P
Sbjct: 571 FLMSDCVVVEI-KEPEPVP 588
Score = 30.7 bits (66), Expect = 0.80
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 589 NSDQATGVEIVMKALRMPCMTIAKNAGL 506
N ++ G +IV +AL P IAKNAG+
Sbjct: 489 NDEEKVGADIVKRALSYPLKLIAKNAGV 516
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 58.0 bits (134), Expect = 5e-09
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = -3
Query: 524 SKKCRLDGSVVVAKVEDLGD-EFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASL 348
+K ++GSVV KV + +FGY+A +Y +++ GIIDPTKVVR L A+ VA
Sbjct: 511 AKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKT 570
Query: 347 LTTAEAVICEIPQEKEPNP 291
++ V+ EI +E EP P
Sbjct: 571 FLMSDCVVVEI-KEPEPVP 588
Score = 30.7 bits (66), Expect = 0.80
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 589 NSDQATGVEIVMKALRMPCMTIAKNAGL 506
N ++ G +IV +AL P IAKNAG+
Sbjct: 489 NDEEKVGADIVKRALSYPLKLIAKNAGV 516
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 54.8 bits (126), Expect = 4e-08
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = -3
Query: 524 SKKCRLDGSVVVAKVEDLGD-EFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASL 348
+K ++GSVV KV + + GY+A +Y +++ GIIDPTKVVR L AS VA
Sbjct: 507 AKNAGVNGSVVSEKVLSSDNPKHGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKT 566
Query: 347 LTTAEAVICEIPQEKEPNP 291
++ V+ EI + + P
Sbjct: 567 FLMSDCVVVEIKEPESAAP 585
Score = 31.9 bits (69), Expect = 0.35
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 589 NSDQATGVEIVMKALRMPCMTIAKNAGL 506
N ++ G +IV KAL P IAKNAG+
Sbjct: 485 NDEEKVGADIVKKALSYPLKLIAKNAGV 512
>At5g59190.1 68418.m07418 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]
Length = 693
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 298 GSFSCGISQITASAVVSSDATPLASVR-AVRTTFVGSMMPFSIMFTYSLLRASYPNSSPR 474
G S ++ + V S+ T + + TTFV S+ PF++ F ++ +PNS+ +
Sbjct: 565 GFDSTTLTTTSGQNVTCSERTEVKDLNYPTMTTFVSSLDPFNVTFKRTVTNVGFPNSTYK 624
Query: 475 SSTLATTTE 501
+S + E
Sbjct: 625 ASVVPLQPE 633
>At5g35390.1 68418.m04206 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
Lycopersicon esculentum, PIR:T07865
Length = 657
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 349 SDATPLASVRA--VRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPSSL 513
S+A P +S R V T V ++ I+ LL SY N PR LA T PSSL
Sbjct: 245 SEARPKSSSRGPLVITAIVAALTILIILGVIFLLNRSYKNKKPR---LAVETGPSSL 298
>At5g24010.1 68418.m02821 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 824
Score = 28.7 bits (61), Expect = 3.2
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = -3
Query: 551 SSEDAMHDNSKKCR--LDGSVVVAKVEDLGDEFGYDALNNEYVNMIEKG---IIDPTKVV 387
SS+ +H + K LD + V AKV D G ++ +V+ KG +DP
Sbjct: 605 SSQGIIHRDIKSTNILLDNNYV-AKVADFGLSRSGPCIDETHVSTGVKGSFGYLDPEYFR 663
Query: 386 RTALTDASGVASLLTTAEAVICEIP 312
R LTD S V S V+C P
Sbjct: 664 RQQLTDKSDVYSFGVVLFEVLCARP 688
>At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containing
protein and genefinder
Length = 559
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 425 MIEKGIIDPTKVVRTALTDASGVASLLTTAEAVICEIPQEKE 300
M EK +I+P+ T + + G A LL AEA+I +P E++
Sbjct: 385 MKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEED 426
>At5g28680.1 68418.m03519 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 858
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -3
Query: 491 VAKVEDLGDEFGYDALNNEYVNMIEKG---IIDPTKVVRTALTDASGVASLLTTAEAVIC 321
VAKV D G +N +V + KG +DP R LT+ S V S V+C
Sbjct: 658 VAKVSDFGLSKTGPNMNGGHVTTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLC 717
Query: 320 EIP 312
P
Sbjct: 718 ARP 720
>At3g19070.1 68416.m02422 cell wall protein-related similar to
vegetative cell wall protein gp1 [Chlamydomonas
reinhardtii] gi|12018147|gb|AAG45420;
Length = 346
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 343 VSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPS 507
+SS + S + + S+ P + + + SY + P SSTLAT++ PS
Sbjct: 74 MSSSSLQPPSSSTLAPSSSSSLQPPAPLIDFFRSSVSYSHQPPSSSTLATSSSPS 128
>At3g04690.1 68416.m00503 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 850
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -3
Query: 491 VAKVEDLGDEFGYDALNNEYVNMIEKG---IIDPTKVVRTALTDASGVASLLTTAEAVIC 321
VAKV D G +N +V + KG +DP R LT+ S V S ++C
Sbjct: 654 VAKVSDFGLSKTGPNMNGGHVTTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEILC 713
Query: 320 EIP 312
P
Sbjct: 714 ARP 716
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 445 RASYPNSSPRSSTLATTTEPSSLHFLLLSCMASSELSLQSLH 570
R S SP +T A + S LLS + SS + LQS H
Sbjct: 595 RVSQTGISPDETTFAGAIQDSISQIELLSFVESSSIELQSRH 636
>At5g38990.1 68418.m04717 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 880
Score = 27.5 bits (58), Expect = 7.5
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = -3
Query: 491 VAKVEDLG-DEFGYDALNNEYVNMIEKGI---IDPTKVVRTALTDASGVASLLTTAEAVI 324
VAKV D G G + + +V+ + KG +DP R LT+ S V S V+
Sbjct: 666 VAKVSDFGLSRVGPTSASQTHVSTVVKGTFGYLDPEYYRRQILTEKSDVYSFGVVLLEVL 725
Query: 323 CEIPQEKEPNP 291
C P + P
Sbjct: 726 CCRPIRMQSVP 736
>At5g08210.1 68418.m00961 expressed protein
Length = 67
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 413 PFQSCLHIHC*GHHTQIHLQG 475
PF C H H GHH +IH G
Sbjct: 27 PFNRCCH-HYYGHHKKIHASG 46
>At3g47730.1 68416.m05200 ABC transporter family protein AbcA,
Dictyostelium discoideum, DDU66526
Length = 983
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 364 LASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPSSL 513
L S R+ R TF+ F + ++A+ S S+ L T T+P++L
Sbjct: 23 LLSWRSKRATFLQLFASFFFILLIFCIQAAMEKSFASSTALKTVTDPTAL 72
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 182 YICNNLYS*MHSRCPLYEDHIMPPNHPFHP 271
Y C + Y H RC I P HP HP
Sbjct: 159 YGCVHCYLFFHERCLDLPTEIQHPVHPMHP 188
>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit
(IRX5) nearly identical to cellulose synthase
[Arabidopsis thaliana] GI:27462651; contains Pfam
profile PF03552: Cellulose synthase
Length = 1049
Score = 27.1 bits (57), Expect = 9.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 504 WFCCCCQGG 478
W CCCC GG
Sbjct: 603 WICCCCGGG 611
>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); some
similarity to s-tomosyn isoform (GI:4689231)[Rattus
norvegicus]; contains non-consensus AT-AC splice sites at
intron 18
Length = 1606
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 463 SSPRSSTLATTTEPSS 510
S P SST+ATTT PSS
Sbjct: 1198 SQPSSSTVATTTAPSS 1213
>At2g39360.1 68415.m04831 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 815
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -3
Query: 491 VAKVEDLG-DEFGYDALNNEYVNMIEKG---IIDPTKVVRTALTDASGVASLLTTAEAVI 324
+AKV D G + G D L+ +V+ KG +DP + R LT+ S V S V+
Sbjct: 625 MAKVADFGLSKTGPD-LDQTHVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVV 683
Query: 323 CEIP 312
C P
Sbjct: 684 CGRP 687
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,229
Number of Sequences: 28952
Number of extensions: 279873
Number of successful extensions: 926
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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