Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00368
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   195   2e-50
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   3e-22
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                 102   3e-22
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 81   6e-16
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 33   0.15 
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)               32   0.45 
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  28   5.5  
SB_17455| Best HMM Match : Ank (HMM E-Value=2.2)                       28   5.5  
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   7.2  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96)                   28   7.2  
SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)                27   9.6  
SB_59266| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  195 bits (476), Expect = 2e-50
 Identities = 94/119 (78%), Positives = 97/119 (81%)
 Frame = +2

Query: 257  LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 436
            L+EPVY  EIQCPE AVGGIYGVLNRRRG V EES VAGTPMFIVKAYLPV ESFGFTAD
Sbjct: 715  LLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTAD 774

Query: 437  LRSNTGGQAFPQCVFDHWQVLPWRPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 613
            LRS TGGQAFPQCVFDHWQVLP    +  S P  VV  TRKRKGLKEG+P L  YLDKL
Sbjct: 775  LRSKTGGQAFPQCVFDHWQVLPGDVHDLASMPGQVVANTRKRKGLKEGIPALDNYLDKL 833



 Score =  154 bits (374), Expect = 5e-38
 Identities = 69/84 (82%), Positives = 76/84 (90%)
 Frame = +3

Query: 3   EGTAPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAI 182
           EGT PN+LVD SKGVQYLNEIKDSVVAGFQWA KEG + +EN+RGVRFNI+DVTLH DAI
Sbjct: 630 EGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGVRFNIHDVTLHADAI 689

Query: 183 HRGGGQIIPTTRRCLYACLLTAQP 254
           HRGGGQIIPT RR LYAC+LTA+P
Sbjct: 690 HRGGGQIIPTARRVLYACMLTAKP 713


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  102 bits (244), Expect = 3e-22
 Identities = 43/88 (48%), Positives = 61/88 (69%)
 Frame = +2

Query: 254 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTA 433
           RLMEP +  E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFGF  
Sbjct: 694 RLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFET 753

Query: 434 DLRSNTGGQAFPQCVFDHWQVLPWRPCE 517
           DLR++T GQAF   VF HWQ++P  P +
Sbjct: 754 DLRTHTQGQAFCLSVFHHWQIVPGDPLD 781



 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
 Frame = +3

Query: 3   EGTAPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLH 170
           E T PNILVD +   +     LN +KDS++ GFQWA +EG + +E +R V+F I D  + 
Sbjct: 606 ENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQWATREGPLCDEPIRNVKFKILDAVIA 665

Query: 171 TDAIHRGGGQIIPTTRRCLYACLLTAQPVSWSLYIFVK 284
            + IHRGGGQIIPT RR  Y+  L A P     Y FV+
Sbjct: 666 GEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVE 703


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score =  102 bits (244), Expect = 3e-22
 Identities = 43/88 (48%), Positives = 61/88 (69%)
 Frame = +2

Query: 254 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTA 433
           RLMEP +  E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFGF  
Sbjct: 4   RLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFET 63

Query: 434 DLRSNTGGQAFPQCVFDHWQVLPWRPCE 517
           DLR++T GQAF   VF HWQ++P  P +
Sbjct: 64  DLRTHTQGQAFCLSVFHHWQIVPGDPLD 91


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 37/86 (43%), Positives = 50/86 (58%)
 Frame = +2

Query: 254 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTA 433
           RLM  +Y C IQ     +G +Y V+ RR G V  E    G+ +F V+A LPV ESFGF+ 
Sbjct: 410 RLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFGFSE 469

Query: 434 DLRSNTGGQAFPQCVFDHWQVLPWRP 511
           ++R  T G A PQ +F HW+ +   P
Sbjct: 470 EIRKRTSGLANPQLMFSHWEAIDLDP 495


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 308 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 460
           G +   +NRR G V       G   F + A +P+N+ FG+  +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203


>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +3

Query: 405 LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSPGDRANLRASPTTLYRKRERGKD*RKVS 584
           +S +   L P+ VPTPA R      S + RS    RAN+R SP       +RG    K S
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSPRYHDHSHQRGSPKTKTS 210


>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
          Length = 491

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 402 YLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSPGDRANLRASPTTLYRKRERG 563
           +  +S+ +L P+C+P  A+  + S  ST   SSP   ++LR+  T L    + G
Sbjct: 378 FQELSQLMLSPVCIPNKANNGACSKISTPTSSSPLTYSSLRSGLTPLKYDSDSG 431


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 489 QWSNTHCGKACPPVLE--RKSAVKPNDSL 409
           Q+   +CG ACPP  E   KS VK N  L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187


>SB_17455| Best HMM Match : Ank (HMM E-Value=2.2)
          Length = 487

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 415 VVRFYCRFAFQHRRTGLPAVRIRPLAGPPLETVRTSEQALQRC 543
           V R +CR+A   +  G+P V +    GP   T+RT  +++ RC
Sbjct: 173 VRRCFCRYAPPQKFHGVPVVLLVLEGGP--NTIRTVLESVSRC 213


>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 256 TG*AVSRHAYKHLLVVGMIWPPPLWMA 176
           T  A+ +H   HL  +  +WP   WMA
Sbjct: 10  TNIALRKHQCSHLFTIKRVWPVTRWMA 36


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 213  TRRCLYACLLTAQPVSWSLYIFVKFSV 293
            TR   Y CL+T Q + W+++  V +S+
Sbjct: 1662 TRPLAYKCLVTKQRIIWAIFSIVLYSL 1688


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = -1

Query: 617  FTICPNIELSLGDLPSILSSFSFPVQRCRACSEVRTVSRGGPANGRIRTAGRPVRRCWNA 438
            FT  PN  +  G++ S+L     P       +    V+ G P        G P  + +  
Sbjct: 995  FTCVPNNTVGTGNVASVLVQVKVPPDYTVLTASPPNVTYGDPVYLNCTATGNPAPQWYQF 1054

Query: 437  NRQ 429
            NRQ
Sbjct: 1055 NRQ 1057


>SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96)
          Length = 570

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 408 SMSRSVLLPICVPTPADRPSRSAYSTIGRSSPGDRANLRASPTTLYRKRERGKD*RKVSQ 587
           S S   +LP        R    A +T  +SS  DR+ L+A PT    K+   +  RK   
Sbjct: 351 SDSEEEVLPTKASRSRGRQQPGAKATTAKSSTRDRSKLQAFPTKKATKKAFSRGARKTVT 410

Query: 588 T 590
           T
Sbjct: 411 T 411


>SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 443 SNTGGQAFPQCVFDHWQVL-PWRPCEPQSKPYNVVQETRKRK 565
           S  G  AFPQ  ++H     P+   EP++ P+N+++   K++
Sbjct: 43  SRYGFNAFPQSSYNHISPPHPYSSPEPRAPPHNILEVPTKQE 84


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 351  SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSS 500
            +K P +   L SL  P  +  S S  L    P+P  +PS    S I +S+
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQST 3123


>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 828

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 444 PTPADRPSRSAYSTIGRSSPGDRANLRASPTTLY 545
           P+P    SR A S  G SS     ++ +SPT +Y
Sbjct: 85  PSPTPVTSRPASSRSGYSSKSGTKSIHSSPTAMY 118


>SB_59266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 1   PRVPPPTSWSIAPKEFSTSMKLRTLLWLDSSGPLRKELWLKRICVVF 141
           PRV P  SW  A   ++ ++++ +L+  D+S P+     +K+I V +
Sbjct: 464 PRVDPSVSWKKARPTYTITVQISSLMLHDNS-PILSSDSVKQIFVAY 509


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,693,594
Number of Sequences: 59808
Number of extensions: 514063
Number of successful extensions: 1417
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)