Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00364X
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7877| Best HMM Match : G-gamma (HMM E-Value=6.9e-15)                51   5e-07
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   29   2.8  
SB_53549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  

>SB_7877| Best HMM Match : G-gamma (HMM E-Value=6.9e-15)
          Length = 70

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 23/44 (52%), Positives = 30/44 (68%)
 Frame = +2

Query: 113 LQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLMV 244
           LQ+QR V EQLRRE  IKR+ VS    DI+ +  EHE +D L++
Sbjct: 9   LQRQRVVVEQLRREVNIKRLKVSQCAGDIVDFCKEHESQDQLVI 52


>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 516

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +1

Query: 106 INVTAAAGCN*AAPQRSSNKENPGICSSFRYHQVYQ*TRARRLPY 240
           IN    AG N  AP    NK  PG    + Y+  YQ  +    PY
Sbjct: 175 INKLMRAGANIIAPISVVNKFPPGTVVDYAYNVFYQDRKIAHTPY 219


>SB_53549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 52  CFCFQHRPLGHSRN 93
           C+CF +R LGH RN
Sbjct: 158 CYCFANRHLGHKRN 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,400,642
Number of Sequences: 59808
Number of extensions: 205349
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)