Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00364X
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    32   0.20 
AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a...    32   0.20 
AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal...    32   0.20 
Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    27   5.7  
AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeri...    27   5.7  
AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, ga...    27   5.7  
AC006795-5|AAK84611.1|  399|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    27   7.5  

>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 17/68 (25%), Positives = 38/68 (55%)
 Frame = +2

Query: 149 REAAIKRIPVSVAVSDIIKYINEHEQEDCLMVGFSIRK*IHSVKKVHVLSFK*SLPLIYL 328
           R   +K +P ++  +D++  +N HE  D  ++    +  +H+V+ V  + F  + PL++L
Sbjct: 49  RYHGMKNLPNALLAADVV--VNLHECTDFSLLPDVAKLQMHNVEVVRSVLFHCNSPLVHL 106

Query: 329 ESPVMETS 352
            +P ++ S
Sbjct: 107 STPFLQCS 114


>AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a
           protein.
          Length = 658

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -2

Query: 273 EWIYFLIENPTIRQSSCSCSLIYLMISETATDTGILFIAA-SLRSCSVTARCC-CNVDTI 100
           EW   LIE  +++ ++   + + L+ +E    T    ++  S+  CS    C  C++D  
Sbjct: 434 EWKSNLIEEKSLKIAASRINDVALLPAEFFFVTSGAGVSQFSVARCSEQPSCALCSLDPY 493

Query: 99  ISITAVSERPMLKTKAKLKD*NWAS 25
            S  AV+ +  LKTK   K   W S
Sbjct: 494 CSWNAVNSKCSLKTKTNEKSVGWIS 518


>AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal
           protein 20, isoform a protein.
          Length = 658

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -2

Query: 273 EWIYFLIENPTIRQSSCSCSLIYLMISETATDTGILFIAA-SLRSCSVTARCC-CNVDTI 100
           EW   LIE  +++ ++   + + L+ +E    T    ++  S+  CS    C  C++D  
Sbjct: 434 EWKSNLIEEKSLKIAASRINDVALLPAEFFFVTSGAGVSQFSVARCSEQPSCALCSLDPY 493

Query: 99  ISITAVSERPMLKTKAKLKD*NWAS 25
            S  AV+ +  LKTK   K   W S
Sbjct: 494 CSWNAVNSKCSLKTKTNEKSVGWIS 518


>Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical
           protein F25D7.5 protein.
          Length = 710

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -2

Query: 312 KDHLKDST*TFFTEWIYFLIENPTIRQSSCSCSLIYLMI 196
           KD + ++T +FFT +  ++ ++PTI  S  SCS   L+I
Sbjct: 183 KDRVTNTTDSFFTRFGNYIFDSPTI-NSLVSCSSTVLLI 220


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 52  CFCFQHRPLGHSRNGYDGINVTA 120
           CFCF H  + ++ +GY  +NV++
Sbjct: 488 CFCFGHSSICNTADGYFAMNVSS 510


>AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 2 protein.
          Length = 62

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 253 DQKVNPFREKSSCTVL 300
           D+KVNP+ EKS C++L
Sbjct: 47  DKKVNPWAEKSKCSML 62


>AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, gamma
           subunit protein 2 protein.
          Length = 62

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 253 DQKVNPFREKSSCTVL 300
           D+KVNP+ EKS C++L
Sbjct: 47  DKKVNPWAEKSKCSML 62


>AC006795-5|AAK84611.1|  399|Caenorhabditis elegans Hypothetical
           protein Y50D4B.3 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 490 FFNTSKFNTNIKTQSMNILINNKMRNRIY 404
           FF+   F+  +KTQ+ +I + N+ +NR +
Sbjct: 27  FFDDVPFHWTLKTQNESIQLGNRFKNRYF 55


>Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 144 SCSVTARCCCNVDTIISITAVSERPMLKTKA 52
           +CS+   CC +VDT  +  + S    L+T+A
Sbjct: 816 TCSIVRNCCASVDTCDNYISSSPVKKLETEA 846


>Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 144 SCSVTARCCCNVDTIISITAVSERPMLKTKA 52
           +CS+   CC +VDT  +  + S    L+T+A
Sbjct: 816 TCSIVRNCCASVDTCDNYISSSPVKKLETEA 846


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 210 IYLMISETATDTGILFIAASLRSCSVTARCCCNVDTIISITAV 82
           IYLM S +A    IL +  S+  C   A+C CN + + ++  V
Sbjct: 839 IYLMASCSAFGLMILGVITSI--CICIAKCSCNQNHVFNVLPV 879


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,307,651
Number of Sequences: 27780
Number of extensions: 158390
Number of successful extensions: 373
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)