Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00364X
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    29   1.7  
At5g08720.1 68418.m01036 expressed protein                             29   2.3  
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf...    27   5.3  
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa...    27   5.3  
At3g14860.2 68416.m01879 NHL repeat-containing protein contains ...    27   5.3  
At3g14860.1 68416.m01878 NHL repeat-containing protein contains ...    27   5.3  
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    27   6.9  

>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +2

Query: 92  MDMMVSTLQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQE 229
           +D  VS  +Q++ V   +++E A+K++P  V  SD     +E E++
Sbjct: 31  IDTKVSLKKQKKDVIAAVQKEKAVKKVPKKVESSDDSDSESEEEEK 76


>At5g08720.1 68418.m01036 expressed protein
          Length = 719

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 134 TEQLRREAAIKRIPVSVAVSDIIKYINEHEQE 229
           T+Q RR   ++R  + V  S+I+K+I+EH QE
Sbjct: 521 TKQRRRIPGLQR-DIEVLKSEILKFISEHGQE 551


>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
           profile PF00400: WD domain, G-beta repeat
          Length = 580

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = -2

Query: 231 SSCSCSLIYLMISETATDTGILFIAASLRSCSVTARCCCNVDTIISITAVSERPMLKTKA 52
           +S SC   Y    E   D GIL     + SC  T     N  T   I+  SE P  + +A
Sbjct: 267 ASLSCVSSYHAHEEVVNDIGILSSTGKVASCDGTIH-VWNSQTGKLISLFSESPSDQDQA 325

Query: 51  KL--KD*NWASPCTRRES 4
                  N ++PC R  S
Sbjct: 326 SSDPSSKNNSNPCNRHAS 343


>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature
          Length = 408

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 195 ISSSISMNTSKKIALWLGFRSESKSIP*KKFMYCP 299
           +++  ++ TSK  A+W   R E +SIP ++ +YCP
Sbjct: 228 LANCANLLTSKLKAMW-ELRIEEESIPVEERVYCP 261


>At3g14860.2 68416.m01879 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 493

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 285 TFFTEWIYFLIEN-PTIRQSSCSCSLIYLMISETATDTG 172
           TFFT WI+F + + P   Q++ S SLI  M S     TG
Sbjct: 20  TFFTLWIFFTLHSFPFQAQAAPSGSLIKHMSSVLKWTTG 58


>At3g14860.1 68416.m01878 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 492

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 285 TFFTEWIYFLIEN-PTIRQSSCSCSLIYLMISETATDTG 172
           TFFT WI+F + + P   Q++ S SLI  M S     TG
Sbjct: 20  TFFTLWIFFTLHSFPFQAQAAPSGSLIKHMSSVLKWTTG 58


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 238 YGWVFDQKVNPFREKSSCTVL*MIFT-SNIFGV 333
           + W++ + +N ++E  SCT    IF  + +FG+
Sbjct: 351 HSWLYRRVLNEYQEVQSCTAFTSIFNDTGLFGI 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,648,143
Number of Sequences: 28952
Number of extensions: 142497
Number of successful extensions: 283
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)