Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00336
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    29   0.31 
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.6  
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   6.6  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   8.7  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  RVLIFLMKYVLNKCSRLTSTVKE*HRXNKNQTRKIIICVITGGRT 193
           R +  +MK + + C+R  S V       K+  +K+++C+I+ GRT
Sbjct: 206 RTMHSVMKNISHLCTRKNSQV-----WGKDAWKKVVVCIISDGRT 245


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 391 AHSPPDVKWLLEPIDIYNVDAPPTLR 314
           A  PP +K    P+DI N+DA   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 53  RRRVLIFLMKYVLNKCSRLTSTVKE*H 133
           ++  L + + Y+L KC  LT TVKE H
Sbjct: 108 KKLFLTYCIPYLLEKCESLT-TVKENH 133


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 332 RATHLEIQVLKSQYSYN 282
           +A HLE+Q+L  QY  N
Sbjct: 305 QARHLEVQILADQYGNN 321


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 397 GRAHSPPDVKWLLEPIDIYN 338
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 37   TGVRIPQAGTNFSNEICTQQMF 102
            T   IP+A  +F+N+I TQ  F
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTF 1323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,999
Number of Sequences: 5004
Number of extensions: 35953
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)