Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00336
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    34   0.043
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009...    28   2.8  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    27   6.5  
03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332     27   8.6  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 34.3 bits (75), Expect = 0.043
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 4   KTSGAFVLKRCTGVRIPQAGTNFSNEICTQQMFTIDFHGE 123
           K  G  ++ RCTGV I   G N   +I T      DFHGE
Sbjct: 150 KKDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>05_04_0309 -
           20100231-20100307,20100362-20100503,20100588-20100967,
           20101049-20101076,20101182-20101306,20101402-20101457,
           20101709-20101791,20101881-20101949,20102050-20102640
          Length = 516

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 29  SDAPVFESRRRVLIFLMKYVLNKCSRLTSTVKE*HRXNKNQTRKIIICVITG 184
           SDA +FES RR+ +  +     K + +   V    + N  Q R ++  +I G
Sbjct: 198 SDATLFESLRRLQLMQLSVSTLKATEIGRAVNGLRKHNSQQIRHLVRTLIEG 249


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 255 RFGLKGGVAVVTILRL*NLYLKVGGASTL*MSMGSSNHLTSG 380
           + G+ G + V+   R   + L +GG     ++MG + HL +G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332
          Length = 190

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 272 WGSRCNYTETLELVSQGGWRVYVVDVYGLQ 361
           W     Y++T ELV + GW+ + VD  G+Q
Sbjct: 72  WSIGVAYSDTGELVLRSGWKEF-VDANGVQ 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,043
Number of Sequences: 37544
Number of extensions: 268847
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)