Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00336
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     27   6.6  
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)                 27   8.7  

>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 272 WGSRCNYTETLELVSQGGWRVYVVD 346
           WGS C +++ + + + GG+ VY +D
Sbjct: 127 WGSICQWSQMIRVKNCGGFYVYELD 151


>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
          Length = 1597

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 270  PSNRNDYCFTAEISRAVVP 214
            P++  DYC+T  ++RA VP
Sbjct: 1327 PTHLKDYCWTKHVARASVP 1345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,324,031
Number of Sequences: 59808
Number of extensions: 288358
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)