Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00334X
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    71   1e-13
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   2.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   2.8  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   3.7  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     25   6.5  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    25   6.5  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    24   8.6  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    24   8.6  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    24   8.6  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = +1

Query: 1   IGTLLGT--SDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWA 174
           IGTLLGT   D   +E+ +CF VPH E ++QVE E+ Y   +Y L+ + N  E +VGW+A
Sbjct: 48  IGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEVEMEYHRAMYHLHLKANPREVVVGWYA 107

Query: 175 TGNEVTNHSSVIHEYYS 225
           T  ++   S++I   Y+
Sbjct: 108 TSPDLDAFSALIQNLYA 124


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 341 HVHSCRCHSHV 373
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 131 TEESIPLKVLLVGGRLAMK*PTTPLLYTSITPVN-AVSLSMLPGHFTGWRSNGFTCIC 301
           T  S+ +   ++   L     +TP L  SITP N + + S++P   T + S+  T +C
Sbjct: 555 TSSSLIISSPIISSSLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLIT-VC 611


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 149 LKVLLVGGRLAMK*PTTPLLYTSITPV 229
           LKV  V   +++  PTTP +Y S TPV
Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPV 402


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 315 LMVHKHMHVNPFDLQPVKCPGNMDRLTAFTGVILVYNRGVVGYFIASR 172
           L V K +H+N  D   +K  G +  L    GV+++  +G   Y  A++
Sbjct: 153 LSVSKWVHLNNHDEGIIKFFGKISSLLETNGVLILEPQGWDSYLKAAK 200


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 227 VNAVSLSMLPGHFTGWRSNGFTCICLCTIRSAKWKARLHVH 349
           +N  + +   G+ T WR+  F C  L  + +AK  A + ++
Sbjct: 225 MNRANTASTIGNSTNWRTFFFLCCLLSPLLTAKLPAAIFMY 265


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 67  HKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSV 207
           H+E   Q +  LN+       N   NS +++   ++  N +  H SV
Sbjct: 113 HEEIHHQQQLHLNHQYQHQHKNVAANSIDNLSRQYSQPNHINTHDSV 159


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 177 SRPPTNNTFRGIDSSVQLVN 118
           SR PT+N+   I+SSV L+N
Sbjct: 4   SRCPTDNSSSRINSSVPLIN 23


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 130 NRRVNSSESIVGWWATGNEVTNHSSVIHE 216
           NR +N +  +   ++TGNEVT  SS + E
Sbjct: 8   NRSLNPTRGL-NLYSTGNEVTWFSSTVDE 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,838
Number of Sequences: 5004
Number of extensions: 40326
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)