Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00334X
(425 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.006
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.075
SB_28420| Best HMM Match : DDE (HMM E-Value=0.00017) 28 2.8
SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6) 28 2.8
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_11065| Best HMM Match : WD40 (HMM E-Value=1.7e-35) 27 6.5
SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0) 27 6.5
SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59) 27 8.6
SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4) 27 8.6
SB_57172| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_34802| Best HMM Match : SBP (HMM E-Value=7.9) 27 8.6
SB_1313| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 4 GTLLGTSDKGVVEVTNCFCVP-HKEHADQVEAELNYAMDVYELNRRVNSSESIVGWW 171
G LLG +E+TNCF P +K D+ + ++NY M+V R VN VGW+
Sbjct: 44 GVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDVNYQMEVMRRLRAVNIDHLHVGWY 100
>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 37.1 bits (82), Expect = 0.006
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 1 IGTLLGTSDKGVVEVTNCFCVPHKE-HADQVE--AELNYAMDVYELNRRVN 144
+G LLG+ KGV++V NCF VP E DQ + +Y ++Y + ++VN
Sbjct: 38 VGVLLGSRRKGVLDVANCFAVPFDEDDRDQNVWFLDHDYLENMYAMFKKVN 88
>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 33.5 bits (73), Expect = 0.075
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 303 CVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKNVS 422
CV +GVP +G MF+ + + PE VG+ V Q+ S
Sbjct: 27 CVKMGVPGKTEGTMFSQIPCEVKLTGPEKVGVDVLQRTKS 66
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 88 VEAELNYAMDVYELNRRVNSSESIVG 165
V EL YA +YEL+++ N +E IVG
Sbjct: 1 VAVELEYAKSMYELSQKANPNEQIVG 26
>SB_28420| Best HMM Match : DDE (HMM E-Value=0.00017)
Length = 609
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 422 RHILLAHLQTYNLRFIARESD--IYRSEHATLLSIWHS 315
+H++ A L+ +N+R AR D + T L IWH+
Sbjct: 248 KHVITAFLKKHNIRMRARHRDKRPVKQSFETKLRIWHA 285
>SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 139 VNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTWT 261
VN+S++ +GW TG+ V + + I + + R +TWT
Sbjct: 134 VNASKNKIGWLRTGSNVKYYKTEIRRDDTTKDRYYYALTWT 174
>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
Length = 219
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 157 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCP 14
Y+ + CS + PSR +P R R + +R+ W++ +CR P
Sbjct: 36 YYNYRHVRCSRSREPSR--IPKRFLRRIHNKSRKLRWVVYHRICRKIP 81
>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 157 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCP 14
Y+ + CS + PSR +P R R + +R+ W++ +CR+ P
Sbjct: 90 YYNYRHVRCSRSREPSR--IPKRFLRRLHNKSRKLRWVVYHRICRNIP 135
>SB_11065| Best HMM Match : WD40 (HMM E-Value=1.7e-35)
Length = 702
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 139 VNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTWTL 264
V+ I+ WW+ E+ +HE + C VH+ W +
Sbjct: 315 VSYLSGIMSWWSINGEL------VHELHGAPCDSIVHLNWAV 350
>SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 979
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +1
Query: 34 VVEVTNCFCVPHKEHADQVEAELNYAMDVYELN----RRVNSSESIVG 165
++ + +C + HKEHAD+ E++ A+ ++ LN R + + E VG
Sbjct: 706 IIALNSCRVMLHKEHADE-ESDYINAVFLHRLNSFTSREIPAEEKSVG 752
>SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -3
Query: 201 GVVGYF-IASRPPTNNTFRG-IDSSVQLVNIHRVIKFRFDLIGMFF--VWHAEAVGYFHH 34
GV+ Y R P ++TF G + V + + I D G + V+H + VG+FHH
Sbjct: 28 GVLDYTDYVLRGPFHDTFLGPFEPCVAQEGVFQNITCVLDEDGFYVNGVFHCKEVGFFHH 87
Query: 33 S 31
+
Sbjct: 88 N 88
>SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)
Length = 351
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 302 LCTIRSAKWKARLHVHSCRC 361
LC+ R+ KW + L H C C
Sbjct: 329 LCSFRNDKWLSSLSDHECLC 348
>SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)
Length = 270
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 257 GHFTGWRSNGFTCICL 304
GH W SNG TC+ L
Sbjct: 203 GHTYSWHSNGVTCVLL 218
>SB_57172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -3
Query: 201 GVVGYF-IASRPPTNNTFRG-IDSSVQLVNIHRVIKFRFDLIGMFF--VWHAEAVGYFHH 34
GV+ Y R P ++TF G + V + + I D G + V+H + VG+FHH
Sbjct: 4 GVLDYTNYVLRGPFHDTFLGPFEPCVAQEGVFQNITCILDEDGFYVNGVFHCKEVGFFHH 63
Query: 33 S 31
+
Sbjct: 64 N 64
>SB_34802| Best HMM Match : SBP (HMM E-Value=7.9)
Length = 283
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -3
Query: 201 GVVGYF-IASRPPTNNTFRG-IDSSVQLVNIHRVIKFRFDLIGMFF--VWHAEAVGYFHH 34
GV+ Y R P ++TF G + V + + I D G + V+H + VG+FHH
Sbjct: 4 GVLDYTNYVLRGPFHDTFLGPFEPCVAQEGVFQNITCILDEDGFYVNGVFHCKEVGFFHH 63
Query: 33 S 31
+
Sbjct: 64 N 64
>SB_1313| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 196 HSSVIHEYYSRECREPVHVTWTLHWLEVEWVYVHMFVYH*ECQMESK 336
HSS + + + P H+ WT +E++ Y+H Y C+ K
Sbjct: 29 HSSSVRPAKKPKKKTPNHMQWTSEKIELQLKYLH--EYKVTCEFNGK 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,253,926
Number of Sequences: 59808
Number of extensions: 331725
Number of successful extensions: 1117
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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