Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00334X
(425 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 86 8e-18
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 60 5e-10
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 60 6e-10
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 48 4e-06
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 32 0.19
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 31 0.43
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 31 0.43
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.57
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.57
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 30 0.75
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 29 1.3
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 29 1.7
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 2.3
At4g11910.1 68417.m01894 expressed protein hypothetical protein ... 27 4.0
At2g26990.1 68415.m03241 COP9 signalosome complex subunit 2 / CS... 27 4.0
At4g22920.1 68417.m03310 expressed protein 27 7.0
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 27 7.0
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 27 7.0
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 27 7.0
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id... 27 7.0
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 26 9.3
At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) simil... 26 9.3
At1g77690.1 68414.m09046 amino acid permease, putative similar t... 26 9.3
At1g48390.1 68414.m05405 syntaxin-related family protein contain... 26 9.3
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 86.2 bits (204), Expect = 8e-18
Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 IGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWAT 177
IGTLLG+ G V++ N + VPH E +DQV +++Y ++ + +VNS E+IVGW++T
Sbjct: 53 IGTLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYST 112
Query: 178 GNEVTNHSSVIHEYYSRECREPVHVT 255
G V SS+IH++Y+RE P+H+T
Sbjct: 113 GAGVNGGSSLIHDFYAREVPNPIHLT 138
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 60.5 bits (140), Expect = 5e-10
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Frame = +1
Query: 1 IGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYELNRRVNSSESIVGWW 171
+G LLG+S +GVV+VTN + VP +E + NY ++ + +R+N+ E +VGW+
Sbjct: 43 VGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWY 102
Query: 172 ATGNEVTNHSSVIHEYYSRECREPVHV 252
+TG ++ + +H ++ PV V
Sbjct: 103 STGPKLRENDLDVHALFNGYVPNPVLV 129
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 60.1 bits (139), Expect = 6e-10
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +1
Query: 1 IGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYELNRRVNSSESIVGWW 171
+G LLG+S +G V+VTN + VP +E + NY ++ + +R+N+ E IVGW+
Sbjct: 43 VGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWY 102
Query: 172 ATGNEVTNHSSVIHEYYSRECREPVHV 252
+TG ++ + +H ++ PV V
Sbjct: 103 STGPKLRENDLDVHALFNGYVPNPVLV 129
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 47.6 bits (108), Expect = 4e-06
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 4 GTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 171
G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VGW+
Sbjct: 49 GQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 31.9 bits (69), Expect = 0.19
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +1
Query: 4 GTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGN 183
G ++G VE+ N F + D ++ ++ EL ++V ++GW++TG+
Sbjct: 60 GCVIGLQRGRTVEIFNSFELIFDPALDTLDR--SFLEKKQELYKKVFPDFYVLGWYSTGS 117
Query: 184 EVTNHSSVIHEYYSRECREPVHV 252
+ T IH+ PV+V
Sbjct: 118 DATESDMHIHKALMDINESPVYV 140
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.7 bits (66), Expect = 0.43
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 209 YTSITPVNAVSLSMLPGHFTGWRSNGFTCICLCTIRSAKWKARLH 343
YT++ PVNAVSLS L H + + R+ K++A+ +
Sbjct: 231 YTTVVPVNAVSLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFY 275
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.7 bits (66), Expect = 0.43
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 209 YTSITPVNAVSLSMLPGHFTGWRSNGFTCICLCTIRSAKWKARLH 343
YT++ PVNAVSLS L H + + R+ K++A+ +
Sbjct: 231 YTTVVPVNAVSLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFY 275
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 0.57
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 141 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 37
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 0.57
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 141 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 37
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 29.9 bits (64), Expect = 0.75
Identities = 19/83 (22%), Positives = 37/83 (44%)
Frame = +1
Query: 4 GTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGN 183
G ++G VE+ N F + + ++ ++ EL ++V I+GW++TG+
Sbjct: 60 GCVIGVQRGRTVEIFNSFELLYDPSTQTLDR--SFLEKKQELYKKVFPDFYILGWYSTGS 117
Query: 184 EVTNHSSVIHEYYSRECREPVHV 252
+ IH+ PV+V
Sbjct: 118 DAEESDMHIHKALMDINESPVYV 140
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = -3
Query: 201 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 97
G+V + ++S+PP F+ +++ Q+V + + +KF
Sbjct: 436 GIVNWKVSSKPPIKLPFKKVENCNQVVKLGKQLKF 470
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 209 YTSITPVNAVSLSMLPGHFTGWRSNGFTCICLCTIRSAKWKARLH 343
YT++ PVNAV++S L H + + R+ K++A+ +
Sbjct: 258 YTTVVPVNAVAMSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFY 302
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 209 YTSITPVNAVSLSMLPGH 262
YT++ PVNAVSLS L H
Sbjct: 231 YTTVVPVNAVSLSPLLNH 248
>At4g11910.1 68417.m01894 expressed protein hypothetical protein
F7H19.100 -Arabidopsis thaliana,PID:e1310060
Length = 466
Score = 27.5 bits (58), Expect = 4.0
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Frame = +2
Query: 50 TASACHTKNMPIKSKRNLI-TRWMFTS*TEESIPLKVLLVG---GRLAMK*PTT-PLLYT 214
T+S C T R+++ +F E+ LKVL +G + K P T L ++
Sbjct: 24 TSSLCVTTRRSKMKNRSIVPVARLFGPAIFEASKLKVLFLGVDEKKHPAKLPRTYTLTHS 83
Query: 215 SITP--VNAVSLSMLPGHFTGWRSNGFTCICLCTIRSAKWKARLHVHSCRCH 364
IT A+S S+ GW + F + + K K LHVH CH
Sbjct: 84 DITAKLTLAISQSINNSQLQGWANKLFRDEVVGEWKKVKGKMSLHVH---CH 132
>At2g26990.1 68415.m03241 COP9 signalosome complex subunit 2 / CSN
complex subunit 2 (CSN2) proteasome, COP9-complex and
eIF3-domain protein; identical to CSN complex subunit 2
[Arabidopsis thaliana] GI:18056655; identical to cDNA
CSN complex subunit 2 (CSN2) GI:18056654
Length = 439
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 327 HLALLMVHKHMHVNPFDLQPVKCPGNMDRLTAFTGVILVYNRGVV 193
+L L + VNPFD Q K N + A T +I Y R +
Sbjct: 275 YLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEI 319
>At4g22920.1 68417.m03310 expressed protein
Length = 268
Score = 26.6 bits (56), Expect = 7.0
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Frame = +2
Query: 137 ESIPLKVLLVGGRLAMK*PTTPLLYT----SITP--VNAVSLSMLPGHFTGWRSNGFTCI 298
ES LKVL +G T P YT IT A+S S+ GW + +
Sbjct: 58 ESSKLKVLFLGVDEKKHPSTLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANRLYRDE 117
Query: 299 CLCTIRSAKWKARLHVHSCRCH 364
+ + K K LHVH CH
Sbjct: 118 VVAEWKKVKGKMSLHVH---CH 136
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 67 HKEHADQVEAEL-NYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEY 219
H + +V L NY + Y+L + ++G W +N +++ +Y
Sbjct: 3125 HAQGRHEVSISLANYILHNYQLKEEASDIYRVIGKWLAETRSSNSRTILEKY 3176
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 382 GS*HVRVTSTGVNM-QPCFPFGTPNGTQTYARKPIRPPASEVSR*H 248
GS H V G+ M +P P+G G Y PPA ++ H
Sbjct: 260 GSGHGHVHGEGMGMVRPAGPYGAAGGISAYGGYSGGPPAHHMNSTH 305
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 382 GS*HVRVTSTGVNM-QPCFPFGTPNGTQTYARKPIRPPASEVSR*H 248
GS H V G+ M +P P+G G Y PPA ++ H
Sbjct: 260 GSGHGHVHGEGMGMVRPAGPYGAAGGISAYGGYSGGPPAHHMNSTH 305
>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
Length = 485
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 141 DSSVQLVNIHRVIKFRFDLIGMFFVW 64
D++V L+ IH+ I F F ++FVW
Sbjct: 312 DAAVILMLIHQFITFGFACTPLYFVW 337
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 180 ASRPPTNNTFRGIDSSVQLVNIHRVIKF 97
AS+PP FR +++ Q++ I + +KF
Sbjct: 441 ASKPPIKMPFRKVENCNQVIKIGKQLKF 468
>At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) similar
to malonyl CoA synthetase GB:AAF28840 from
[Bradyrhizobium japonicum]; contains Pfam AMP-binding
enzyme domain PF00501; identical to cDNA acyl-activating
enzyme 13 (At3g16170) GI:29893232, acyl-activating
enzyme 13 [Arabidopsis thaliana] GI:29893233
Length = 544
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 270 PVKCPGNMDRLTAFTGVILVYNRGVVGY 187
PV D +T FTGV +Y R + GY
Sbjct: 260 PVNDEKTNDSITVFTGVPTMYTRLIQGY 287
>At1g77690.1 68414.m09046 amino acid permease, putative similar to
AUX1 (regulator of root gravitropism, putative permease)
GI:1531758 GB:CAA67308 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 470
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 141 DSSVQLVNIHRVIKFRFDLIGMFFVW 64
D++V L+ IH+ I F F ++FVW
Sbjct: 310 DTAVILMLIHQFITFGFASTPLYFVW 335
>At1g48390.1 68414.m05405 syntaxin-related family protein contains a
novel domain similar to F-box that is shared among other
proteins in Arabidopsis; similar to proteins At3g54160,
At1g47920 (syntaxin SYP81), At5g41830, At3g44180,
At3g58890, At1g56610, At1g48390, At3g59270 [Arabidopsis
thaliana]
Length = 413
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 61 RRSSWLLPPLLCRSCP 14
+R+ W + PLL RSCP
Sbjct: 299 KRNGWQVMPLLIRSCP 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,396,992
Number of Sequences: 28952
Number of extensions: 220241
Number of successful extensions: 558
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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