Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00332X
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   132   4e-32
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   131   6e-32
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   2.5  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   5.7  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   5.7  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   7.5  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   7.5  
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc...    25   7.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   10.0 

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  132 bits (318), Expect = 4e-32
 Identities = 61/90 (67%), Positives = 73/90 (81%)
 Frame = +2

Query: 260 GHSCNRPLRDGERKRKLVRGCIVDANXSVLALVIVXKGAQEIPGLTDGNVPRRLGPKRAS 439
           GH C RP RDGERKRK VRGCIV  + +VLAL IV +G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRNEKK 529
           KIR+ FNLSKEDDVR++V++R + P+ E K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  101 bits (241), Expect = 9e-23
 Identities = 46/78 (58%), Positives = 57/78 (73%)
 Frame = +3

Query: 24  MKLNVSYPATGCQK*FEVVDEHKLRIFYEKRMVAEVEADQLGDEWEGYVLRVAGGNDKQG 203
           MKLN+SYPA G QK  E+ D+ +LR+F EKRM  EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQ 257
           FPM  GVL   RVRLL++
Sbjct: 61  FPMFQGVLLPHRVRLLLR 78


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  131 bits (317), Expect = 6e-32
 Identities = 60/90 (66%), Positives = 73/90 (81%)
 Frame = +2

Query: 260 GHSCNRPLRDGERKRKLVRGCIVDANXSVLALVIVXKGAQEIPGLTDGNVPRRLGPKRAS 439
           GH C RP RDGERKRK VRGCIV  + +VLAL I+ +G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRNEKK 529
           KIR+ FNLSKEDDVR++V++R + P+ E K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  101 bits (241), Expect = 9e-23
 Identities = 46/78 (58%), Positives = 57/78 (73%)
 Frame = +3

Query: 24  MKLNVSYPATGCQK*FEVVDEHKLRIFYEKRMVAEVEADQLGDEWEGYVLRVAGGNDKQG 203
           MKLN+SYPA G QK  E+ D+ +LR+F EKRM  EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQ 257
           FPM  GVL   RVRLL++
Sbjct: 61  FPMFQGVLLPHRVRLLLR 78


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 318 PRTNLRFLSPSRS-GLLHEWPFAS 250
           P +NLR L+PSRS   +HE P +S
Sbjct: 408 PPSNLRILAPSRSRATIHERPSSS 431


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 327 TIHPRTNLRFLSPSRSGLLHEWPFASEDEHGC 232
           ++HP  N  FL+ S SG    W F  +    C
Sbjct: 281 SVHPTDNSFFLTTSSSGRWTIWQFLDDGYREC 312


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 188 QRQARIP-DETWRPDKQPCSSSDANGHS 268
           QR+A I  D+ + PD+ P + + AN H+
Sbjct: 415 QRKAAIEEDDNYEPDENPLTETLANAHN 442


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -1

Query: 550 PYVWV*HF-LFVPWLEHAF 497
           P+ WV    LFV WL+HAF
Sbjct: 415 PFFWVIGSELFVDWLKHAF 433


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 44  PGNGMPEVVRSGGRAQASYLLR 109
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 345 TEXLASTIHPRTNLRFLSPSRSGLLHEWPFASEDEH 238
           T  LA    P+T LR+ +    GL+ E P  ++ E+
Sbjct: 71  TGLLAIYTDPKTRLRYHNKEIYGLIRELPSGADQEY 106


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 553 VPYVWV*HFLFVPWLEHAFDDITTYIIFFAKVEQLTDFGSTF 428
           + +V   +FL + W    FDD    ++FF    ++T++   F
Sbjct: 148 IAFVCSPNFLTLKWNSSLFDDDLARLLFFMINSKITNYDLPF 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,865
Number of Sequences: 5004
Number of extensions: 45859
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)