Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00332X
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 109 1e-24
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 108 3e-24
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 30 1.4
02_05_0628 - 30466535-30468001 29 1.9
03_02_0212 + 6461511-6461573,6461643-6461924,6462065-6462271,646... 29 3.3
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 28 4.4
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 28 5.8
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 28 5.8
10_08_0944 + 21735483-21735848,21737025-21737276 27 7.7
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323... 27 7.7
07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664... 27 7.7
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 109 bits (263), Expect = 1e-24
Identities = 57/94 (60%), Positives = 68/94 (72%), Gaps = 3/94 (3%)
Frame = +2
Query: 284 RDGERKRKLVRGCIVDANXSVLALVIVXKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 463
RDGER+RK VRGCIV + SV+ LVIV KG ++PGLTD PR GPKRASKIRKLFNL
Sbjct: 90 RDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNL 149
Query: 464 SKEDDVRRYV--VKRVLQPRNEKKMLN-PDIRHL 556
SK+DDVR+YV +R +N KK+ P I+ L
Sbjct: 150 SKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183
Score = 104 bits (249), Expect = 6e-23
Identities = 46/81 (56%), Positives = 59/81 (72%)
Frame = +3
Query: 24 MKLNVSYPATGCQK*FEVVDEHKLRIFYEKRMVAEVEADQLGDEWEGYVLRVAGGNDKQG 203
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E++GYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQMAT 266
FPMK GVLT RVRLL+ T
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGT 81
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 108 bits (259), Expect = 3e-24
Identities = 56/94 (59%), Positives = 68/94 (72%), Gaps = 3/94 (3%)
Frame = +2
Query: 284 RDGERKRKLVRGCIVDANXSVLALVIVXKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 463
RDGER+RK VRGCIV + SV+ LVIV KG ++PGLTD PR GPKRASKIRKLFNL
Sbjct: 90 RDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNL 149
Query: 464 SKEDDVRRYV--VKRVLQPRNEKKMLN-PDIRHL 556
+K+DDVR+YV +R +N KK+ P I+ L
Sbjct: 150 AKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183
Score = 107 bits (256), Expect = 8e-24
Identities = 47/81 (58%), Positives = 60/81 (74%)
Frame = +3
Query: 24 MKLNVSYPATGCQK*FEVVDEHKLRIFYEKRMVAEVEADQLGDEWEGYVLRVAGGNDKQG 203
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E++GYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQMAT 266
FPMK GVLT+ RVRLL+ T
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGT 81
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 87 HKL-RIFYEKRMVAEVEADQLGDEWEGYVLRVAGGNDKQGFPMKHGVLTNSRVRLLMQMA 263
HKL + Y +M++EVE D +W Y ++ G K PM+ + T ++ Q A
Sbjct: 190 HKLYKRAYHPKMISEVELD---GKWRQYKSKLKRGYYKPNLPMERVLQTVPKIVAKSQWA 246
Query: 264 THVT 275
T V+
Sbjct: 247 TLVS 250
>02_05_0628 - 30466535-30468001
Length = 488
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 297 LSPSRSGLLHEWPFASEDEHG-CLSGRHVSSGILACRCRQRHEVHSPPIH 151
LSP+ SGL + PF+ +G L R SG A R +RH + +H
Sbjct: 9 LSPATSGLPPKSPFSKRASNGAALRCRAAFSGDAALRAFRRHHLDGRALH 58
>03_02_0212 +
6461511-6461573,6461643-6461924,6462065-6462271,
6463187-6463285,6463649-6463713,6464327-6464471,
6466065-6466151
Length = 315
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 189 NDKQGFPMKHGVLTNSRVRLLMQMATHVTDRSAMERENV 305
N QGFP+ H V + L H+ RSA+ +EN+
Sbjct: 273 NGNQGFPLAHVVAYKAGHALHTDFLRHLLGRSAVGQENL 311
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 137 SLYFGDHALFVKDTKLVLVHHFELLLASRCRVRNV*LHDCGQS 9
S Y D LF+ T V + F+ L RC V + LH C Q+
Sbjct: 68 SSYKTDLQLFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQN 110
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 194 QARIPDETWRPDKQPCSSSDANGHSCNR 277
Q+ +P+ ++ +K P +D NGHS R
Sbjct: 565 QSDLPESVYQVEKVPVKDNDGNGHSSLR 592
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 541 WV*HFLFVPWLEHAFDDITTYIIFFAKVEQLTDFG 437
W H L V WL FD + Y + ++ L D G
Sbjct: 102 WEKHKLMVRWLRRFFDYLDRYYVTRRSLDSLKDLG 136
>10_08_0944 + 21735483-21735848,21737025-21737276
Length = 205
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 287 RGAVCYMSGHLHQKTNTAVCQDAMFHRESLLV 192
R V Y G+LH T VC A +H E + V
Sbjct: 63 RTEVGYSQGNLHDPTYEDVCTGATYHNEVVRV 94
>09_04_0683 -
19431034-19431495,19431632-19431997,19432055-19432326,
19433621-19433686,19433924-19433978,19434509-19434577,
19435200-19435307,19435394-19435462,19435883-19436038,
19436089-19436229,19436514-19436568,19437103-19437233,
19437382-19437486
Length = 684
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 43 TRQRDARSSSKWWTSTSFVSFTKSAWSPK*RLI 141
TR ++A + +W+ TSFV WS +L+
Sbjct: 94 TRMQEAPNHKDYWSMTSFVKLVGRPWSVVTKLV 126
>07_03_1510 +
27264999-27265371,27265485-27265546,27265768-27266436,
27266842-27267288
Length = 516
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -2
Query: 258 FASEDEHGCLSGRHVSSGILACRCRQRHEVHSPPIHR-LTDQPLLRRPCAFR 106
FA E EHG + R + + A + H P I R + +Q + C R
Sbjct: 399 FAQELEHGQIKRRFIKRLVDALNANMKQNAHCPGIRRVILEQSIYMMECNSR 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,035
Number of Sequences: 37544
Number of extensions: 349174
Number of successful extensions: 1097
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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