Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00332X
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              138   2e-33
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   36   0.030
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      30   1.1  
SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)                   30   1.5  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      30   1.5  
SB_51108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_18400| Best HMM Match : MED7 (HMM E-Value=1.8)                      29   2.6  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_36328| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   3.4  
SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  138 bits (335), Expect = 2e-33
 Identities = 64/92 (69%), Positives = 74/92 (80%)
 Frame = +2

Query: 254 ANGHSCNRPLRDGERKRKLVRGCIVDANXSVLALVIVXKGAQEIPGLTDGNVPRRLGPKR 433
           + GHSC RP R GERKRK VRGCIVD+  SVL+LVIV KG Q+IPGLTD  +PRRLGPKR
Sbjct: 45  SKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKR 104

Query: 434 ASKIRKLFNLSKEDDVRRYVVKRVLQPRNEKK 529
             KIRK+FNLSKEDDVR+YV++R L  +  KK
Sbjct: 105 VGKIRKMFNLSKEDDVRQYVIRRPLPEKEGKK 136



 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 30/43 (69%), Positives = 36/43 (83%)
 Frame = +3

Query: 126 EVEADQLGDEWEGYVLRVAGGNDKQGFPMKHGVLTNSRVRLLM 254
           EV  + LGDEW+GYV R+ GGNDKQGFPMK G++TN RVRLL+
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLL 44


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 251 QKTNTAVCQDAMFHRESLLVVAASDTKYIALPFIA*LISLYFGDHALFVK 102
           Q+ + A+  D + H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 132 EADQLGDEWEGYVL--RVAGGNDKQGFPMK 215
           E D+ G EWEG+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)
          Length = 611

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -2

Query: 225 GRHVSSGILACRCRQRHEVHSPPI--HRLTDQ-PLLR-RPCAFRKRYEACARPPLRTTS 61
           G H    ++A R R+RH+   PP   H  TD  P  R RP   R + E+ A+  L +TS
Sbjct: 255 GVHPPRDLVAQRNRERHDADEPPAKRHHHTDHAPAQRGRPPLRRAQDESRAKTELNSTS 313


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 281 LRDGERKRKLVRGCIVDANXSVLALVIVXKGAQEIPGLTDGNVPRRLGPKRASKIRK 451
           L+   R    VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 76  LQVDSRGSPCVRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_51108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +2

Query: 200 RIPDETWR--PDKQPCSSSDANGHS 268
           ++P+ETW+  P+K  C++ + NG S
Sbjct: 60  KLPNETWKFSPEKDSCTADEVNGFS 84


>SB_18400| Best HMM Match : MED7 (HMM E-Value=1.8)
          Length = 303

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 383 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRNEKKMLNPDI 547
           I GL D   P  +  K A  + + FN+    + R+ ++K+  +P N  K+L P +
Sbjct: 154 ISGLVDTGPP--VSAKLAELVNESFNIELPTEQRKQLLKKFKKPSNCDKVLCPKV 206


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 258  FASEDEHGCLSGRHVSSGILACRCRQRHEVHSPPIHRL 145
            F+S DE+      H+ +G++   CR   EVH   I R+
Sbjct: 1033 FSSNDEYARYVRDHIQTGMMVRCCRTYEEVHEGDIGRV 1070


>SB_36328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1526

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
 Frame = -2

Query: 393 NPGISWAPLXTITRAKTEXLASTIHPRTN--LRFLSPSRSGLLHEWPFASEDE-HGCL-- 229
           N  + +A    + R   + +  T  P T   L +LS   S +  +  F  E + HG L  
Sbjct: 534 NFSLYYAHAKAMLRLPKKVVKETFSPGTKRYLSYLSALNSDINFDGRFERELKVHGGLPS 593

Query: 228 ---SGRHVSSGILACRCRQRHEVHSPPIHRLTDQPLLRRPCAFRKRYEACARPPLRTT 64
              S  H++ G L    R+   +    I R+ D+P L RP     R +    PP+  T
Sbjct: 594 PSQSNIHLAVGALRMSSRKSTSLSPSRIRRMYDKPRLIRPAV---RLDTLIPPPIAVT 648


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 401 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 499
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 359 IVXKGAQEIPGLTD---GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRNEKK 529
           I+ K   ++  LT      +   L   R   +  ++NL  +D+VR+   +  +Q RN+  
Sbjct: 298 IIAKVLDKVSALTKMPKSKIEMHLSRNRYDTVSGIYNLILDDEVRQLAEREKMQVRNKYV 357

Query: 530 MLN 538
           ++N
Sbjct: 358 LIN 360


>SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 102 FYEKRMVAEVEADQLGDEWEGYVL-RVAGGNDKQG 203
           FY K++   ++   L +EW+ +V   +A G DK G
Sbjct: 10  FYNKKLEDYMKNTSLNEEWQDWVRHNIAAGCDKNG 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,226,767
Number of Sequences: 59808
Number of extensions: 391715
Number of successful extensions: 1143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)