Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00332X
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   122   2e-28
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    28   4.0  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   6.9  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   6.9  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   6.9  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   6.9  
Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  122 bits (294), Expect = 2e-28
 Identities = 54/78 (69%), Positives = 65/78 (83%)
 Frame = +3

Query: 24  MKLNVSYPATGCQK*FEVVDEHKLRIFYEKRMVAEVEADQLGDEWEGYVLRVAGGNDKQG 203
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEW+GYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQ 257
           FPMK G+LTN RVRLL++
Sbjct: 61  FPMKQGILTNGRVRLLLK 78



 Score =  118 bits (284), Expect = 3e-27
 Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
 Frame = +2

Query: 260 GHSCNRPLRDGERKRKLVRGCIVDANXSVLALVIVXKGAQEIPGLTDGNVPRRLGPKRAS 439
           G SC R  ++GERKRK VRGCIVDAN S L+LVIV KG  EI GLTD  +PR+LGPKRAS
Sbjct: 80  GQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRAS 139

Query: 440 KIRKLFNLSKEDDVRRYVVKR-VLQPRNEKKMLNPDIRHL 556
           KIRKLFNL+K DDV +YV+      P    K + P I+ L
Sbjct: 140 KIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTIAPKIQRL 179


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +3

Query: 42  YPATGCQK*FEVVDEHK---LRIFYEKRMVAEVEADQLGDEWEGYVLRVAGGNDKQGFPM 212
           Y   G  + FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+   +
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK--QL 63

Query: 213 KHGVLTNSRVRLLMQMATHVTDRSAMERE 299
            + V    +V  L  M T ++D  A+ ++
Sbjct: 64  ANDVREAQKV--LRTMQTRISDLKALGKD 90


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 333  ASTIHPRTNLRFLSPSRSGLLHEWPFASEDEHGCLSGRHVSSGILACRCRQRHEVHSPPI 154
            A+ + P TNL   SPS   +   W   +++   C + R+    I     R++ ++ S  I
Sbjct: 2423 AAPLSPPTNLNLASPSNVQVRVSWQAPNQNSWKCSAIRYKLEYINGTEGRKQIDLPSSSI 2482

Query: 153  HRLTD 139
              L D
Sbjct: 2483 EHLFD 2487


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 333  ASTIHPRTNLRFLSPSRSGLLHEWPFASEDEHGCLSGRHVSSGILACRCRQRHEVHSPPI 154
            A+ + P TNL   SPS   +   W   +++   C + R+    I     R++ ++ S  I
Sbjct: 2423 AAPLSPPTNLNLASPSNVQVRVSWQAPNQNSWKCSAIRYKLEYINGTEGRKQIDLPSSSI 2482

Query: 153  HRLTD 139
              L D
Sbjct: 2483 EHLFD 2487


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 333  ASTIHPRTNLRFLSPSRSGLLHEWPFASEDEHGCLSGRHVSSGILACRCRQRHEVHSPPI 154
            A+ + P TNL   SPS   +   W   +++   C + R+    I     R++ ++ S  I
Sbjct: 2423 AAPLSPPTNLNLASPSNVQVRVSWQAPNQNSWKCSAIRYKLEYINGTEGRKQIDLPSSSI 2482

Query: 153  HRLTD 139
              L D
Sbjct: 2483 EHLFD 2487


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 333  ASTIHPRTNLRFLSPSRSGLLHEWPFASEDEHGCLSGRHVSSGILACRCRQRHEVHSPPI 154
            A+ + P TNL   SPS   +   W   +++   C + R+    I     R++ ++ S  I
Sbjct: 2423 AAPLSPPTNLNLASPSNVQVRVSWQAPNQNSWKCSAIRYKLEYINGTEGRKQIDLPSSSI 2482

Query: 153  HRLTD 139
              L D
Sbjct: 2483 EHLFD 2487


>Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical
           protein F37D6.2c protein.
          Length = 584

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 263 HSCNRPLRDGERKRKLVR 316
           H C R + D ERKR++VR
Sbjct: 483 HKCRRSINDIERKREIVR 500


>Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical
           protein F37D6.2b protein.
          Length = 581

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 263 HSCNRPLRDGERKRKLVR 316
           H C R + D ERKR++VR
Sbjct: 480 HKCRRSINDIERKREIVR 497


>Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical
           protein F37D6.2a protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 263 HSCNRPLRDGERKRKLVR 316
           H C R + D ERKR++VR
Sbjct: 481 HKCRRSINDIERKREIVR 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,135,002
Number of Sequences: 27780
Number of extensions: 272982
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)