Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00332X
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   106   1e-23
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             105   3e-23
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    28   3.7  
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote...    28   3.7  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   4.9  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    28   4.9  
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1...    27   6.4  
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea...    27   8.5  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  106 bits (254), Expect = 1e-23
 Identities = 48/81 (59%), Positives = 59/81 (72%)
 Frame = +3

Query: 24  MKLNVSYPATGCQK*FEVVDEHKLRIFYEKRMVAEVEADQLGDEWEGYVLRVAGGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E++GYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQMAT 266
           FPMK GVLT  RVRLL+   T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81



 Score =  102 bits (244), Expect = 2e-22
 Identities = 50/70 (71%), Positives = 54/70 (77%)
 Frame = +2

Query: 284 RDGERKRKLVRGCIVDANXSVLALVIVXKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 463
           R GER+RK VRGCIV  + SVL LVIV KG  ++PGLTD   PR  GPKRASKIRKLFNL
Sbjct: 90  RTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNL 149

Query: 464 SKEDDVRRYV 493
            KEDDVR YV
Sbjct: 150 KKEDDVRTYV 159


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  105 bits (251), Expect = 3e-23
 Identities = 47/81 (58%), Positives = 59/81 (72%)
 Frame = +3

Query: 24  MKLNVSYPATGCQK*FEVVDEHKLRIFYEKRMVAEVEADQLGDEWEGYVLRVAGGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E++GYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQMAT 266
           FPMK GVLT  RVRLL+   T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81



 Score =  105 bits (251), Expect = 3e-23
 Identities = 56/94 (59%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
 Frame = +2

Query: 284 RDGERKRKLVRGCIVDANXSVLALVIVXKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 463
           R GER+RK VRGCIV  + SVL LVIV KG  ++PGLTD   PR  GPKRASKIRKLFNL
Sbjct: 90  RTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNL 149

Query: 464 SKEDDVRRYV--VKRVLQPRNEKKMLN-PDIRHL 556
            KEDDVR+YV   +R    +  KK+   P I+ L
Sbjct: 150 GKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRL 183


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 392 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRNEKK 529
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+   +N KK
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRL---KNVKK 330


>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 691

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 215 TWRPDKQPCSSSDANGHSCN 274
           +W PD  PCSS   +G +C+
Sbjct: 46  SWTPDADPCSSGSFDGVACD 65


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 EIPGLTDGNVPRRLGPKRASKIRKL 454
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 72  EVVDEHKLRIFYEKRMVAEVEADQLGDE 155
           EV DE KLR+ YE++     + D LG E
Sbjct: 607 EVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
           putative similar to heat shock protein 101 GI:6715468
           GB:AAF26423 from [Arabidopsis thaliana]
          Length = 623

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -3

Query: 293 LHRGAVCYMSGHLHQKTNTAVCQDAMFHRESLLVVAASDTKYIALPFIA*LISLYFGDHA 114
           L RG + ++     ++  T V +DA F R    V  A  +    +  +  L   Y G H 
Sbjct: 269 LARGQLRFIGATTLEEYRTHVEKDAAFERRFQQVFVAEPSVPDTISILRGLKEKYEGHHG 328

Query: 113 LFVKDTKLVL 84
           + ++D  LVL
Sbjct: 329 VRIQDRALVL 338


>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
           family protein contains WD-40 repeats (PF00400); similar
           to Glutamate-rich WD repeat protein (GRWD)
           (SP:Q9BQ67)[Homo sapiens]
          Length = 469

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 393 NPGISWAPLXTITRAKTEXLASTIHPRTNLRFLSPSRSGLLHEWPFAS 250
           +P ++ APL   +  K E  A    P T  R LS     ++H W  AS
Sbjct: 208 SPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPAS 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,544,977
Number of Sequences: 28952
Number of extensions: 259915
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)