Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00331
(663 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 153 3e-36
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 153 4e-36
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 153 4e-36
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 141 2e-32
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 138 1e-31
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 129 7e-29
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 122 1e-26
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 118 2e-25
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 116 4e-25
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 113 4e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 103 4e-21
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 83 8e-15
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 80 5e-14
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 75 2e-12
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 74 3e-12
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 72 1e-11
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 72 1e-11
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 71 2e-11
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 67 4e-10
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 64 2e-09
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 64 4e-09
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 61 2e-08
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 60 4e-08
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 60 6e-08
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 58 2e-07
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 56 8e-07
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 3e-06
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 53 5e-06
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 53 5e-06
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 53 7e-06
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 48 2e-04
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 42 0.010
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 41 0.031
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 40 0.040
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.28
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 33 4.6
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 6.1
UniRef50_O01508 Cluster: Putative uncharacterized protein; n=1; ... 33 6.1
UniRef50_Q18ED9 Cluster: Cell surface calcium-binding acidic-rep... 33 6.1
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 153 bits (372), Expect = 3e-36
Identities = 69/84 (82%), Positives = 77/84 (91%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
GV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+KVDGKVRTDPTYPA
Sbjct: 25 GVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPA 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
G+MDV+++EKT E FRL+YDVKGR
Sbjct: 85 GYMDVITLEKTGEFFRLVYDVKGR 108
Score = 148 bits (359), Expect = 1e-34
Identities = 66/87 (75%), Positives = 75/87 (86%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+
Sbjct: 107 GRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIAS 166
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI D+IKF+SGNLCMITGGRNLGRVG
Sbjct: 167 GKITDYIKFDSGNLCMITGGRNLGRVG 193
Score = 76.6 bits (180), Expect = 5e-13
Identities = 34/42 (80%), Positives = 36/42 (85%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
LG G +V+RERHPGSFDIVHIKDS GH FATRL NVFIIGK
Sbjct: 189 LGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGK 230
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 153 bits (371), Expect = 4e-36
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+DGKVRTD TYP
Sbjct: 25 GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPT 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDV+SI+KT E FRLIYDVKGR
Sbjct: 85 GFMDVISIDKTGEHFRLIYDVKGR 108
Score = 121 bits (292), Expect(2) = 4e-28
Identities = 49/74 (66%), Positives = 64/74 (86%)
Frame = +2
Query: 287 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 466
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 467 LCMITGGRNLGRVG 508
+CM+TGG NLGR+G
Sbjct: 212 MCMVTGGANLGRIG 225
Score = 73.7 bits (173), Expect = 4e-12
Identities = 30/42 (71%), Positives = 38/42 (90%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
LG G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGK
Sbjct: 221 LGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGK 262
Score = 26.2 bits (55), Expect(2) = 4e-28
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 248 GQITIHRITPEEAK 289
G+ T+HRIT EEAK
Sbjct: 107 GRFTVHRITAEEAK 120
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 153 bits (371), Expect = 4e-36
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+DGKVRTD TYPA
Sbjct: 25 GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPA 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDV+SI+KT E FRLIYD KGR
Sbjct: 85 GFMDVISIDKTGENFRLIYDTKGR 108
Score = 149 bits (360), Expect = 8e-35
Identities = 62/87 (71%), Positives = 76/87 (87%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T
Sbjct: 107 GRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLET 166
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI DFIKF++GNLCM+TGG NLGR+G
Sbjct: 167 GKITDFIKFDTGNLCMVTGGANLGRIG 193
Score = 70.5 bits (165), Expect = 3e-11
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
LG G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGK
Sbjct: 189 LGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGK 230
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 141 bits (341), Expect = 2e-32
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D+ T
Sbjct: 79 GRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQIDLET 138
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI DF KF++GNLCM+TGG NLGR+G
Sbjct: 139 GKITDFFKFDTGNLCMVTGGTNLGRIG 165
Score = 91.5 bits (217), Expect = 2e-17
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGK 155
GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q IK+DGK
Sbjct: 25 GVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMDGK 75
Score = 68.5 bits (160), Expect = 1e-10
Identities = 27/42 (64%), Positives = 36/42 (85%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
LG G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGK
Sbjct: 161 LGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGK 202
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 138 bits (334), Expect = 1e-31
Identities = 63/84 (75%), Positives = 72/84 (85%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+VDGKVRTD TYPA
Sbjct: 25 GAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPA 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDVVSI KTNE FRL+YD KGR
Sbjct: 85 GFMDVVSIPKTNENFRLLYDTKGR 108
Score = 124 bits (299), Expect = 2e-27
Identities = 54/87 (62%), Positives = 69/87 (79%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+
Sbjct: 107 GRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEE 166
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI++FIKF+ GN+ M+TGGRN GRVG
Sbjct: 167 NKIVEFIKFDVGNVVMVTGGRNRGRVG 193
Score = 61.3 bits (142), Expect = 2e-08
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +1
Query: 496 GACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
G G I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGK 230
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 129 bits (311), Expect = 7e-29
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+RL+KVDGKVRT+ YP
Sbjct: 39 GKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPT 98
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
G MDV+ + K+NELFR+IYD KGR
Sbjct: 99 GLMDVIELGKSNELFRIIYDCKGR 122
Score = 94.7 bits (225), Expect = 2e-18
Identities = 39/89 (43%), Positives = 62/89 (69%)
Frame = +2
Query: 242 C*GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDI 421
C G+ +H I +EA +KL +V + G K +P++VTHDGRTI Y DP ++V+D+++ +I
Sbjct: 119 CKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNI 178
Query: 422 ATTKIMDFIKFESGNLCMITGGRNLGRVG 508
T ++ IKF+ G++ M+T G N+GRVG
Sbjct: 179 KTGEVESVIKFKVGDVAMVTAGGNVGRVG 207
Score = 50.4 bits (115), Expect = 4e-05
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
+G G I E+ SFDIVH+KD++G FATR+ NVF+IG+
Sbjct: 203 VGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGE 244
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 122 bits (293), Expect = 1e-26
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK R IK+DGK+RTD YP
Sbjct: 25 GTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIKIDGKIRTDTRYPV 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDV+SI +T E FRL+Y+ K R
Sbjct: 85 GFMDVLSIPRTKENFRLMYNTKRR 108
Score = 105 bits (252), Expect = 9e-22
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +2
Query: 269 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 448
+T E+AK+KLCK+++ G +PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+
Sbjct: 114 LTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFV 173
Query: 449 KFESGNLCMITGGRNLGRVG 508
KF+ GN M+ GG +GRVG
Sbjct: 174 KFDIGNTAMMIGGNGMGRVG 193
Score = 68.9 bits (161), Expect = 1e-10
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
+G G IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGK
Sbjct: 189 MGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGK 230
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 118 bits (283), Expect = 2e-25
Identities = 54/84 (64%), Positives = 63/84 (75%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q L+ VD R D YPA
Sbjct: 22 GVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVHVDNHPRRDGKYPA 81
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDVV I KT + FRL+YDVKGR
Sbjct: 82 GFMDVVEIPKTGDRFRLMYDVKGR 105
Score = 75.8 bits (178), Expect = 9e-13
Identities = 35/87 (40%), Positives = 49/87 (56%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ + ++ EA+ KL KV + T VP VTHDG IRYPDP + D+I ++
Sbjct: 104 GRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKE 163
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
K +D IK G ++TGG N GR+G
Sbjct: 164 KKCVDLIKNRQGKAVIVTGGANRGRIG 190
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = +1
Query: 496 GACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
G G IV E HPG+F+I H+KD++G FATR N+F+IGK
Sbjct: 187 GRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGK 227
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 116 bits (280), Expect = 4e-25
Identities = 50/87 (57%), Positives = 67/87 (77%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+ LIK NDSI LD+
Sbjct: 107 GHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLN 166
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
K++DFIKF G+LC++ G N+GR+G
Sbjct: 167 NKVIDFIKFSIGSLCVVIKGSNIGRIG 193
Score = 97.9 bits (233), Expect = 2e-19
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+ I VDGKVR D +PA
Sbjct: 25 GIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEIYVDGKVRADKNFPA 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKG 251
G MDV+SI+ T E +R++YD G
Sbjct: 85 GVMDVISIKTTKENYRVLYDNVG 107
Score = 35.1 bits (77), Expect = 1.5
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
+G G ++ GS IV +KD G +F+T+ N+F+IGK
Sbjct: 189 IGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGK 230
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 113 bits (272), Expect = 4e-24
Identities = 48/86 (55%), Positives = 67/86 (77%)
Frame = +2
Query: 251 QITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATT 430
+ +HRITPEE KYKLCK++++ K +P+LV HD T+R+PD LIKVND+IQ+D+ T
Sbjct: 118 RFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETG 177
Query: 431 KIMDFIKFESGNLCMITGGRNLGRVG 508
KI +KF++GNLC++TGG N GR+G
Sbjct: 178 KI-TALKFDTGNLCLVTGGGNWGRIG 202
Score = 112 bits (270), Expect = 6e-24
Identities = 57/84 (67%), Positives = 63/84 (75%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q IKVDGK+RTD P
Sbjct: 36 GVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFIKVDGKIRTDNNLPY 94
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
MDV+SI+K E F LIY + R
Sbjct: 95 WIMDVISIDKMGEDFCLIYGINRR 118
Score = 39.5 bits (88), Expect = 0.071
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 496 GACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
G G I +RERHP SFD H+KD+ ++F+ +F+I K
Sbjct: 199 GRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDK 235
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 103 bits (247), Expect = 4e-21
Identities = 44/87 (50%), Positives = 60/87 (68%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P IK+ D+++ D+
Sbjct: 219 GRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVN 278
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI +F ESGN+C I G N+GRVG
Sbjct: 279 NKIENFAHLESGNVCYIQQGNNIGRVG 305
Score = 101 bits (243), Expect = 1e-20
Identities = 49/83 (59%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Frame = +3
Query: 12 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 185
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 186 FMDVVSIEKTNELFRLIYDVKGR 254
MDVV IEKT++ FR++YD KGR
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGR 220
Score = 54.8 bits (126), Expect = 2e-06
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
+G G I E+H GSFDI H+KD+ G+ FATRL N+F++G+
Sbjct: 301 IGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQ 342
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 82.6 bits (195), Expect = 8e-15
Identities = 38/81 (46%), Positives = 55/81 (67%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G +A P++GPHK EC+PL + L+YA E+ I+ ++ IKV+G+VRT+ +P
Sbjct: 25 GTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPV 84
Query: 183 GFMDVVSIEKTNELFRLIYDV 245
G DVVSIEKT E FR++Y+V
Sbjct: 85 GLFDVVSIEKTGEHFRVLYNV 105
Score = 57.2 bits (132), Expect = 3e-07
Identities = 28/83 (33%), Positives = 51/83 (61%)
Frame = +2
Query: 260 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 439
+HRI+ EEA Y+L KV + + +PY+V+ G +IR+ DP I + +I++ T+K++
Sbjct: 111 LHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVI 169
Query: 440 DFIKFESGNLCMITGGRNLGRVG 508
++I + ++ G+ GRVG
Sbjct: 170 EYIVPGPDKVIFVSRGKARGRVG 192
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 79.8 bits (188), Expect = 5e-14
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
GV+ RPS GPH L LPL + +R+ LKYA T +E I+ + +KVDG VR D +P
Sbjct: 21 GVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPV 80
Query: 183 GFMDVVSIEKTNELFRLIYD 242
G MDV+ I T E++R++ D
Sbjct: 81 GLMDVIEIVPTGEVYRVVPD 100
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 74.9 bits (176), Expect = 2e-12
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 9 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 188
+A +P GPH + LPL++ +RN L YA T E K++ + +VDG VR D +P GF
Sbjct: 28 WAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGF 87
Query: 189 MDVVSIEKTNELFRLI-YDVK 248
MDV+ + T E FR++ Y VK
Sbjct: 88 MDVIEVVDTGEKFRMLPYPVK 108
Score = 46.4 bits (105), Expect = 6e-04
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = +2
Query: 260 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI--RYPDP------LIKVNDSIQL 415
+H I EE K +++ T L HDGR I R DP + + D++ +
Sbjct: 112 LHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLI 171
Query: 416 DIATTKIMDFIKFESGNLCMITGGRNLGRVG 508
+ +I IKF G + +I GGRN+GRVG
Sbjct: 172 TVPGQEIKGHIKFGEGAIAIIVGGRNVGRVG 202
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 74.1 bits (174), Expect = 3e-12
Identities = 34/78 (43%), Positives = 49/78 (62%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G +APRP GPH + +PL+I +R+ L YA E KI+ + I VDG VR +P +P
Sbjct: 29 GKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPV 88
Query: 183 GFMDVVSIEKTNELFRLI 236
G MDVV I +T + +R++
Sbjct: 89 GIMDVVEIPRTGDRYRVV 106
Score = 35.1 bits (77), Expect = 1.5
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Frame = +2
Query: 269 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRYPDP------LIKVNDSIQLDI- 421
I+ EEA+ K+C++K + HDG+ + DP + V DS+ L++
Sbjct: 118 ISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELP 177
Query: 422 -----ATTKIMDFIKFESGNLCMITGGRNLGRVG 508
+ K++D I FE G GR+ G VG
Sbjct: 178 EPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVG 211
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 72.1 bits (169), Expect = 1e-11
Identities = 33/75 (44%), Positives = 44/75 (58%)
Frame = +3
Query: 18 RPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 197
+PS GPH +PL + LR+ YA T E I+ + +KVDGKVR D YP G MDV
Sbjct: 25 KPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDV 84
Query: 198 VSIEKTNELFRLIYD 242
+ + NE +R+I D
Sbjct: 85 IELTPINEYYRIIPD 99
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 72.1 bits (169), Expect = 1e-11
Identities = 33/82 (40%), Positives = 52/82 (63%)
Frame = +3
Query: 9 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 188
+ RPS GPH + + LPL++ +R+ LKYA E KI++ I +DG R + +PAG
Sbjct: 28 FTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGL 87
Query: 189 MDVVSIEKTNELFRLIYDVKGR 254
MDV+SI + +E + +++D GR
Sbjct: 88 MDVLSIPEMDETYLVLFDESGR 109
Score = 35.1 bits (77), Expect = 1.5
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTHDGRT--------IRYPDPLIKV 397
G+I++ + ++ KLCK+ K V G N+ L HDGR + + + K
Sbjct: 108 GRISLKKT--DKTDVKLCKIVNKTVVKGG-NIQ-LNLHDGRNQIVKVSDAAKAEEDVYKT 163
Query: 398 NDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 499
DS+ + I I + F G L ITGG+++G
Sbjct: 164 GDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVG 197
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 71.3 bits (167), Expect = 2e-11
Identities = 32/81 (39%), Positives = 48/81 (59%)
Frame = +3
Query: 18 RPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 197
+PS G H + L L + +R+ LK A E +I+ + VDG+V D +P GFMD+
Sbjct: 31 KPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDI 90
Query: 198 VSIEKTNELFRLIYDVKGRSQ 260
+ I KT E++R++ D KGR Q
Sbjct: 91 IEIPKTGEVYRVLLDKKGRLQ 111
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 66.9 bits (156), Expect = 4e-10
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = +3
Query: 6 VYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAG 185
V+ +PS GPH L +P+ I LR+ YA T E +I+ R+I+VDG+V TD +P G
Sbjct: 29 VWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVDGRVVTDYKFPVG 88
Query: 186 FMDVVSIEKTNELFRLIYD 242
MDV+ I + +R++ D
Sbjct: 89 LMDVLHIIPEEKYYRVVPD 107
Score = 46.4 bits (105), Expect = 6e-04
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +2
Query: 269 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPDPL-IKVNDSIQLDIA 424
I PEEA YKL +++R T HDGR + Y + K D++ + I
Sbjct: 117 IKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIP 176
Query: 425 TTKIMDFIKFESGNLCMITGGRNLGRVG 508
I+ + FE G L ++ GRN+G +G
Sbjct: 177 RQSIVSHVPFEVGTLAIVVDGRNVGFMG 204
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 64.5 bits (150), Expect = 2e-09
Identities = 27/78 (34%), Positives = 47/78 (60%)
Frame = +3
Query: 21 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 200
P+ H + +P++I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+
Sbjct: 28 PTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVL 87
Query: 201 SIEKTNELFRLIYDVKGR 254
SI+ + ++YD KG+
Sbjct: 88 SIDTLENDYIIVYDRKGK 105
Score = 38.7 bits (86), Expect = 0.12
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKV-KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA 424
G++ I + P KL KV K+ G + L HDG+TI I +D + + I
Sbjct: 104 GKLVIRQNAPGNKGLKLFKVVKKTIIGTGKIQ-LGFHDGKTIVTDRKDINTSDVLLMKIP 162
Query: 425 TTKIMDFIKFESGNLCMITGGRNLGRV 505
+I + +K G+ ITGG ++G +
Sbjct: 163 DLEIENVLKIAEGDKVFITGGSHVGEL 189
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 63.7 bits (148), Expect = 4e-09
Identities = 33/75 (44%), Positives = 42/75 (56%)
Frame = +3
Query: 18 RPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 197
R GPHK++E +PL I L+ LK T E +I+ + VDGKVR D YP G MDV
Sbjct: 25 RSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDV 84
Query: 198 VSIEKTNELFRLIYD 242
V I + R+I D
Sbjct: 85 VEIPSADLRVRIIPD 99
Score = 37.1 bits (82), Expect = 0.38
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 ITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP-DPLIKVN----DSIQLD 418
+T I+ E+AKYK ++ T V L DGR I + L + N +++++
Sbjct: 104 LTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIE 163
Query: 419 IATTKIMDFIKFESGNLCMITGGRNLGRVG 508
+ KI + G MI GGRN G G
Sbjct: 164 LPEQKITTAYTIKEGVYAMIIGGRNAGLHG 193
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/86 (32%), Positives = 49/86 (56%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G++T++ I E K+CKV ++ ++T D R ++ IKV DS+ +
Sbjct: 107 GKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTIN 166
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRV 505
+I+ +KFE G+LC+IT G++LG +
Sbjct: 167 DEIVYALKFEVGSLCLITRGKHLGTI 192
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G++ + S+GPH + + L+ ++ A E K+VK + V+GK +P
Sbjct: 25 GIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPI 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
MD +S N+ +R++ G+
Sbjct: 85 SLMDTISFPLANKHYRVLLSKAGK 108
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 60.5 bits (140), Expect = 4e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +3
Query: 9 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 188
+ +P G H +PLV+ LR+ LK A +E+ KI+ + + VDGKVR D Y G
Sbjct: 24 WVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGM 83
Query: 189 MDVVSIEKTNELFRLIYDVKGR 254
D +SI N +R++ + G+
Sbjct: 84 FDTISIPAINANYRVVIGMDGK 105
Score = 38.3 bits (85), Expect = 0.16
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +2
Query: 263 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 442
H + +A K+CK+ L HDG T+ + K DS+ L + KI
Sbjct: 107 HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTMIASNDY-KTKDSVILKMPERKIDQ 165
Query: 443 FIKFESGNLCMITGGRNLGRVG 508
+ G+L M+T G++ G +G
Sbjct: 166 HFTYAVGSLVMVTEGKHSGEIG 187
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 59.7 bits (138), Expect = 6e-08
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G + +PS GPH +P+ ++LR+ L A EV ++ + VDG+ D +P
Sbjct: 26 GYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPV 85
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
G DV++I + NE +R++ D +G+
Sbjct: 86 GLFDVLAIPEINEYYRVLLDERGK 109
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 57.6 bits (133), Expect = 2e-07
Identities = 27/75 (36%), Positives = 41/75 (54%)
Frame = +3
Query: 30 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 209
GPH LPL + +R+ LK E +I+ + + VDG R D +P G DV+++
Sbjct: 29 GPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLP 88
Query: 210 KTNELFRLIYDVKGR 254
NE +R++ D KGR
Sbjct: 89 LVNEAYRMLQDEKGR 103
Score = 42.7 bits (96), Expect = 0.008
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G++ ++++ KLC++ T L +DG I + DS+ L I
Sbjct: 102 GRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSNDY-GTKDSLILSIPD 159
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVGPSCPARDI 532
++ +KFE GNL M+ GG++ G G R++
Sbjct: 160 KHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREV 194
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 56.0 bits (129), Expect = 8e-07
Identities = 31/87 (35%), Positives = 42/87 (48%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G + + + T E A KL KV+ P N L THDGRT D KV D + +
Sbjct: 101 GALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPD 160
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI + IK + GN IT G ++ + G
Sbjct: 161 MKISEIIKMQPGNKAYITAGSHVNQTG 187
Score = 52.8 bits (121), Expect = 7e-06
Identities = 26/81 (32%), Positives = 45/81 (55%)
Frame = +3
Query: 9 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 188
+ P P+ G H + + L+ +R+ LK + E +I+ L+KVDGK + + GF
Sbjct: 23 WGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGF 82
Query: 189 MDVVSIEKTNELFRLIYDVKG 251
MDV+ I E +R++Y+ +G
Sbjct: 83 MDVIEI--NGESYRVVYNDQG 101
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +3
Query: 9 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 188
Y S+GPH LP+ I+LR+ +++AL EV KI+ R + ++G + TD
Sbjct: 22 YVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQVLLNGHIVTDEHIGIDV 80
Query: 189 MDVVSIEKTNELFRLIYDVKGR 254
D++S K ++ + ++ D KGR
Sbjct: 81 FDIISFPKIDKHYMILVDEKGR 102
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 53.2 bits (122), Expect = 5e-06
Identities = 27/83 (32%), Positives = 46/83 (55%)
Frame = +3
Query: 6 VYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAG 185
++ +P+ G H C+PL + LR+ L A E +++ R + VDG++ TD G
Sbjct: 23 IWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATRQVLVDGRIETDLGRGVG 82
Query: 186 FMDVVSIEKTNELFRLIYDVKGR 254
MDV+++ + + FR I DV G+
Sbjct: 83 LMDVLTVGE--DSFRCILDVNGK 103
Score = 38.3 bits (85), Expect = 0.16
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVNDSIQLDIA 424
G++ I+ + A KLC+V +T + HDGR I D L D++ + +
Sbjct: 102 GKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLP 161
Query: 425 TTKIMDFIKFESGNLCMITGGRNLGRVGPSCPARDIPAPS 544
+ F G +TGG ++G + +RDI S
Sbjct: 162 DQSVAGHHPFSKGATAYLTGGSHIG-ITAKVVSRDIKRSS 200
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 53.2 bits (122), Expect = 5e-06
Identities = 31/99 (31%), Positives = 48/99 (48%)
Frame = +3
Query: 9 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 188
+ + + GPH LP+ ++LR + A +EV KI+ QR + V+G+ D G
Sbjct: 23 FVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILHQRDVLVNGRACKDSRMGLGV 81
Query: 189 MDVVSIEKTNELFRLIYDVKGRSQSTVSPLRRLSTSCVK 305
D+VSI K + +R+ DVKG + P T K
Sbjct: 82 FDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCK 120
Score = 42.3 bits (95), Expect = 0.010
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G + I E AK +LCK++ T L G + D K DS+ + + T
Sbjct: 102 GNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGT 160
Query: 428 T-----KIMDFIKFESGNLCMITGGRNLGRVG 508
+I+D + GN+ MI GG++ G+VG
Sbjct: 161 DGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVG 192
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 52.8 bits (121), Expect = 7e-06
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +3
Query: 30 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 209
GPH + +PL + LR+ L E +++ + + VDG R D +P G MD+++I
Sbjct: 30 GPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNVLVDGVARKDLRFPVGLMDIITIP 89
Query: 210 KTNELFRLIYDVKGR 254
N +R++ D K R
Sbjct: 90 LNNVEYRVMLDGKSR 104
Score = 41.1 bits (92), Expect = 0.023
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +2
Query: 293 KLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLC 472
KLC+++ + + + +DG I + DSI L + K++ IK+E GNL
Sbjct: 117 KLCRIEGKTSIKEGKIQMRLNDGVNIIGSNNY-NTKDSIILSVPDKKVVKHIKYEVGNLA 175
Query: 473 MITGGRNLGRVG 508
MI GG + G VG
Sbjct: 176 MIVGGSHAGEVG 187
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 48.0 bits (109), Expect = 2e-04
Identities = 27/75 (36%), Positives = 41/75 (54%)
Frame = +3
Query: 30 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 209
G HK +PL+I LR+ LK E+ +I+ L+ VDGKV + GFMD +++
Sbjct: 30 GSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTVS 89
Query: 210 KTNELFRLIYDVKGR 254
+ L + YD KG+
Sbjct: 90 GNDYL--VSYDRKGK 102
Score = 41.5 bits (93), Expect = 0.018
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 275 PEEAK-YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIK 451
P E K KL +VK + HDG T+ IK DS+ + I +I+D +K
Sbjct: 109 PGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLK 168
Query: 452 FESGNLCMITGGRNLGRV 505
F GN ITGG ++G +
Sbjct: 169 FAPGNRVFITGGSHVGEI 186
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 42.3 bits (95), Expect = 0.010
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 30 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 209
G H +P + LR+ L T E K + ++VDG RT + G MDVV +
Sbjct: 35 GAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSGNVEVDGVKRTSLHHGIGLMDVVELG 94
Query: 210 KTNELFRLI 236
T +++R++
Sbjct: 95 GTGDIYRMV 103
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.7 bits (91), Expect = 0.031
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 24 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 203
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 204 IEKTNELFRLIYDVKGRSQS-TVSPLRRLS 290
IE +++ L+ + KG ++ V L +LS
Sbjct: 158 IEDMDQVLNLLSNYKGVPKAYLVERLHQLS 187
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 40.3 bits (90), Expect = 0.040
Identities = 22/82 (26%), Positives = 39/82 (47%)
Frame = +3
Query: 9 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 188
+ + GPH +PL+I LR+ L YA E + + + ++GK +D P G
Sbjct: 23 FTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGM 81
Query: 189 MDVVSIEKTNELFRLIYDVKGR 254
D+++ + E +R+ GR
Sbjct: 82 FDILAFTEREEYYRVFPGEGGR 103
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.28
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -2
Query: 224 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 45
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 44 QLV 36
Q +
Sbjct: 110 QFI 112
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 33.5 bits (73), Expect = 4.6
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = -1
Query: 612 DYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGP 505
D EHV + R + ++ GVL VHN EG + LA D P
Sbjct: 53 DGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHP 88
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 6.1
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +2
Query: 344 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 478
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_O01508 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 623
Score = 33.1 bits (72), Expect = 6.1
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 379
GQI + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>UniRef50_Q18ED9 Cluster: Cell surface calcium-binding acidic-repeat
protein; n=1; Haloquadratum walsbyi DSM 16790|Rep: Cell
surface calcium-binding acidic-repeat protein -
Haloquadratum walsbyi (strain DSM 16790)
Length = 830
Score = 33.1 bits (72), Expect = 6.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 488 RNLGRVGPSCPARDIPAPS-TLCTSRTPRDTPSP 586
R+ G +G CPAR P P+ T + TP TP+P
Sbjct: 498 RDSGSLGKGCPARTTPTPTPTPTDTPTPTSTPTP 531
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,707,981
Number of Sequences: 1657284
Number of extensions: 16647867
Number of successful extensions: 51019
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 48435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50999
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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