Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00331
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 144 1e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 143 2e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 142 3e-35
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.79
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.0
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 1.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.2
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 26 5.6
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (349), Expect = 1e-35
Identities = 63/84 (75%), Positives = 72/84 (85%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKVDGKVRTD T+P
Sbjct: 25 GTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPT 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDV+S+EKT E FRL+YD+KGR
Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGR 108
Score = 138 bits (335), Expect = 5e-34
Identities = 62/87 (71%), Positives = 73/87 (83%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ T+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T
Sbjct: 107 GRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLET 166
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI FIKF++ M+TGGRN+GRVG
Sbjct: 167 NKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 57.6 bits (133), Expect = 1e-09
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
+G G IV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 143 bits (346), Expect = 2e-35
Identities = 62/84 (73%), Positives = 72/84 (85%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKVDGKVRTD T+P
Sbjct: 25 GTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPT 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDV+S++KT E FRL+YD+KGR
Sbjct: 85 GFMDVISVDKTGEHFRLVYDIKGR 108
Score = 138 bits (335), Expect = 5e-34
Identities = 62/87 (71%), Positives = 73/87 (83%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ T+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T
Sbjct: 107 GRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLET 166
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI FIKF++ M+TGGRN+GRVG
Sbjct: 167 NKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 57.6 bits (133), Expect = 1e-09
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
+G G IV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 142 bits (345), Expect = 3e-35
Identities = 62/84 (73%), Positives = 72/84 (85%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLI+VDGKVRTD T+P
Sbjct: 25 GTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPT 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDV+S+EKT E FRL+YD+KGR
Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGR 108
Score = 138 bits (335), Expect = 5e-34
Identities = 62/87 (71%), Positives = 73/87 (83%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ T+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T
Sbjct: 107 GRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLET 166
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI FIKF++ M+TGGRN+GRVG
Sbjct: 167 NKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 57.6 bits (133), Expect = 1e-09
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +1
Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
+G G IV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.79
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 609 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 511
Y V+ P EG LD+H+ A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 485 GRNLGRVGPSCPARDIPAPSTLCTSRTPRDTPSP 586
G N+G P IP T + P DTP+P
Sbjct: 239 GDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTP 272
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2
Query: 185 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 30
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 391 QSQRFHPVRHCNYED 435
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 5.6
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Frame = +3
Query: 108 EVLKIVKQRLIKVDGKV--RTDPTYPAGFMDVVSIEKTNELFRLIYD-------VKGRSQ 260
EV K+ ++ I+ G DP+Y +D +S+++ + RL+ D +
Sbjct: 194 EVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVEDKELMKRVAEENIM 253
Query: 261 STVSPLRRLSTSCVKS 308
T+ PL L CV S
Sbjct: 254 LTMCPLSNLKLRCVNS 269
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 60 LVIFLRNRLKYALTGNEVLKIV 125
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,050
Number of Sequences: 5004
Number of extensions: 64709
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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