Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00331
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 135 3e-32
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 132 2e-31
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 132 2e-31
11_06_0087 - 19919224-19922304 29 2.5
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 2.5
04_03_1015 - 21734381-21736534 29 2.5
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 29 3.3
02_04_0083 + 19566476-19566539,19566781-19567006,19567206-195673... 28 5.8
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 7.6
04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577 28 7.6
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 135 bits (327), Expect = 3e-32
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDGKVRTD TYPA
Sbjct: 41 GAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPA 100
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDVVSI KT E FRL+YD KGR
Sbjct: 101 GFMDVVSIAKTGENFRLLYDTKGR 124
Score = 126 bits (304), Expect = 2e-29
Identities = 54/87 (62%), Positives = 70/87 (80%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T
Sbjct: 123 GRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLET 182
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 183 NKIVDFIKFDVGNIVMVTGGRNTGRVG 209
Score = 58.8 bits (136), Expect = 4e-09
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 496 GACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
G G I SRE+H GSF+ +H++D+ GH FATR+ NVF IGK
Sbjct: 206 GRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGK 246
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 132 bits (319), Expect = 2e-31
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPA
Sbjct: 25 GAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPA 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDV+SI KT E +RL+YD KGR
Sbjct: 85 GFMDVISIPKTGENYRLLYDTKGR 108
Score = 123 bits (297), Expect = 1e-28
Identities = 52/87 (59%), Positives = 69/87 (79%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T
Sbjct: 107 GRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLET 166
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 167 NKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 496 GACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
G G I +RE+H GSF+ +H++D+ GH FATRL NVF IGK
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGK 230
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 132 bits (319), Expect = 2e-31
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
G +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPA
Sbjct: 25 GAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPA 84
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDV+SI KT E +RL+YD KGR
Sbjct: 85 GFMDVISIPKTGENYRLLYDTKGR 108
Score = 124 bits (299), Expect = 6e-29
Identities = 53/87 (60%), Positives = 69/87 (79%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T
Sbjct: 107 GRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLET 166
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 167 NKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Score = 58.8 bits (136), Expect = 4e-09
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 496 GACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
G G I +RE+H GSF+ +H++D+ GH FATRL NVF IGK
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGK 230
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 324 DLRMFRTW*RMMAA-PSAIQTHLSKSTIPSS*TLQLRRL 437
DL R W +A PS HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 207 EKTNELFRLIYDVKGRSQSTVSPLRRLSTSCV-KSSVW 317
++ EL RL+ D G+S S + ++RL S + K + W
Sbjct: 1091 QRVEELLRLVADANGKSTSLQTTVQRLEQSLIEKEATW 1128
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 288 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 413
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 75 SGKSPGASTRATCGDRLTVSVH 10
+G+SPG + RA GD L V+VH
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVH 71
>02_04_0083 +
19566476-19566539,19566781-19567006,19567206-19567389,
19569483-19569582,19570015-19570122,19570373-19570452,
19570566-19570644,19570774-19570832,19570938-19571006,
19571577-19571690,19571772-19571840,19572340-19572361,
19572455-19572522,19573630-19573715,19574220-19574349,
19575032-19575133,19575211-19575279
Length = 542
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 586 WRRCVPWSP*CAQCRRSRDVSRGTRWAHTPQVTAS 482
WRR + W+ C R+ D R W P VT+S
Sbjct: 57 WRRALTWNMDGGGCGRAGDDLRRGPWMMPPPVTSS 91
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 350 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 484
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577
Length = 464
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 576 VSRGVLDVH-NVEGAGMSLAGHDGPTRPKLRPPVIIHKFPDSNLMK 442
++ G+LD++ ++ A + P P RPP +PDS L+K
Sbjct: 57 LNHGLLDLYWSLPAADSRIPASSDPDHPPPRPPRAHSPYPDSPLIK 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,191,630
Number of Sequences: 37544
Number of extensions: 487483
Number of successful extensions: 1507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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