Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00331
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   6e-39
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      31   0.84 
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      29   2.6  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.5  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_29582| Best HMM Match : SAC3_GANP (HMM E-Value=0)                   28   7.8  
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)                 28   7.8  
SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  157 bits (382), Expect = 6e-39
 Identities = 72/84 (85%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
           GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQRLIK+DGKVRTD TYPA
Sbjct: 449 GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIKIDGKVRTDTTYPA 508

Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
           GFMDVV+I+KT E FRL+YDVKGR
Sbjct: 509 GFMDVVTIDKTGENFRLLYDVKGR 532



 Score =  132 bits (319), Expect = 2e-31
 Identities = 56/87 (64%), Positives = 72/87 (82%)
 Frame = +2

Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
           G+  +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYPDP IKVND++ +DI T
Sbjct: 531 GRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKT 590

Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
            K++D+IKF++GN+ M+ GGRN+GRVG
Sbjct: 591 GKVIDYIKFDTGNMAMVVGGRNMGRVG 617



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +1

Query: 493 LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
           +G  G +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGK
Sbjct: 613 MGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGK 654


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/69 (23%), Positives = 37/69 (53%)
 Frame = +3

Query: 87  KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRSQST 266
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R + T
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTRKR-T 654

Query: 267 VSPLRRLST 293
           VS  R+L++
Sbjct: 655 VSVNRQLTS 663


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = +2

Query: 254 ITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 433
           + I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + 
Sbjct: 285 VRIRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSV 344

Query: 434 IMDFIKFESGNLCM 475
           +  F  FE G  CM
Sbjct: 345 V--FPDFEKGVACM 356


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 494 LGRVGPSCPARDIPAPSTLCTSRTPRDTPSPRG*TTCS*SARHEGVHLVAARQG 655
           LGRV  + P R   +P     +RTP  TPS R  +T S  +   G  L ++ +G
Sbjct: 382 LGRVARTPPRRAAASPLVGYAARTPPRTPSIRTHSTYSSRSGVSGASLASSPRG 435


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 74  EES--SEVCFDRKRSPENCE 127
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -3

Query: 151 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 35
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_29582| Best HMM Match : SAC3_GANP (HMM E-Value=0)
          Length = 337

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 656 ALAARPRDVRLRALPIMNTLFNLVAKVCPVESL 558
           A+ +  RD+R+RAL +MNT ++    + P+  L
Sbjct: 231 AVVSYVRDMRIRALDVMNTAYSSQQCMFPIADL 263


>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
          Length = 530

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 660 GCPCRAATRCTPSCLADYE 604
           GCP   A  CTP+C A+ +
Sbjct: 446 GCPSMCAPSCTPACCAEQQ 464


>SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 626 LRALPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMGPHAPS 492
           +  L  M   F L  K C VE+L  + +  P  L    +G +APS
Sbjct: 248 IEVLKRMGMAFGLEKKSCSVENLKTSRTMVPKALEPYVVGANAPS 292


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +2

Query: 278  EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 448
            E+A   +C++ R+   P+    LV   G   +++      I   +  Q+ +     +  +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030

Query: 449  KFESGNLCMITGGRNLGRV 505
            K +  NLC   G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,150,967
Number of Sequences: 59808
Number of extensions: 547349
Number of successful extensions: 1688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1685
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)