Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00331
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 123 1e-28
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical p... 29 2.9
AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical pr... 29 3.9
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF043701-2|ABP57820.1| 167|Caenorhabditis elegans Hypothetical ... 28 5.1
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.8
Z81589-5|CAB04722.1| 233|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z81589-4|CAB04721.1| 256|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 27 9.0
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 27 9.0
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 27 9.0
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 123 bits (297), Expect = 1e-28
Identities = 56/84 (66%), Positives = 68/84 (80%)
Frame = +3
Query: 3 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
GV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+ QR+++VDGKVRT +P
Sbjct: 24 GVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPT 83
Query: 183 GFMDVVSIEKTNELFRLIYDVKGR 254
GFMDVV+IE+TNE FR++YD KGR
Sbjct: 84 GFMDVVAIERTNEYFRMLYDTKGR 107
Score = 116 bits (280), Expect = 1e-26
Identities = 54/87 (62%), Positives = 64/87 (73%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 427
G+ +HRI EA +KLCKVK V T K VP L T DGRTIRYPDP +KVND+I +I+T
Sbjct: 106 GRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNIST 165
Query: 428 TKIMDFIKFESGNLCMITGGRNLGRVG 508
KI D +KFE GNL +TGGRN+GRVG
Sbjct: 166 QKITDSVKFEPGNLAYVTGGRNVGRVG 192
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +1
Query: 466 LVYDHGRP*LGACGPIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 618
L Y G +G G I RER PG+ DI+HIKDS GH+FATR++NVF+IGK
Sbjct: 179 LAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGK 229
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +2
Query: 248 GQITIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 379
GQI + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 553 AQCRRSRDVSRGTRWAHTPQVTASRDHTQVPGLKLDEVHNL 431
++ S +G +W P T R TQ+ G+K E HNL
Sbjct: 852 SEASTSTKAKKGKKWKPNP--TVIRTLTQIFGIKASEAHNL 890
>AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 553 AQCRRSRDVSRGTRWAHTPQVTASRDHTQVPGLKLDEVHNL 431
++ S +G +W P T R TQ+ G+K E HNL
Sbjct: 852 SEASTSTKAKKGKKWKPNP--TVIRTLTQIFGIKASEAHNL 890
>Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical
protein C54E10.1 protein.
Length = 872
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 216 NELFRLIYDVKGRSQSTVSPLRRLSTSCVKSSVWRPDLR 332
+E+ +++ D+KGRSQ SP+ + +S SS P R
Sbjct: 826 SEMKKIVIDIKGRSQE--SPIHSIPSSSGSSSTSSPSAR 862
>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
C13F10.4 protein.
Length = 2076
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 228 RLIYDVKGRSQSTVSPLRRLSTSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIP 407
+L+ D+ ST +RR S SC++ V R + + R +++ + T+ K +P
Sbjct: 1085 QLVVDISSLLSSTHLVIRRQSVSCLRQLVQR-ESKEVRNHAQVLVPQGIVDTNKKKFALP 1143
Query: 408 SS 413
S
Sbjct: 1144 ES 1145
>AF043701-2|ABP57820.1| 167|Caenorhabditis elegans Hypothetical
protein K12C11.5 protein.
Length = 167
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +3
Query: 204 IEKTNELFRLIYDVKGRSQSTVSPLRRLSTSCVKSSVWRPDLRMFRTW*RMMAAPSAIQT 383
I+K EL+++IYD +G S V L L V + +PDL+ + R+ P IQ
Sbjct: 31 IQKEKELYQVIYDPEGIS---VHDLALLGQKNVADGLVKPDLKP-KKMGRVTLMPD-IQP 85
Query: 384 HLS 392
HL+
Sbjct: 86 HLT 88
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -1
Query: 405 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVICP 247
E ++ + G V P C Y PVA + H Y A + ++R CP
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCP 919
>Z81589-5|CAB04722.1| 233|Caenorhabditis elegans Hypothetical
protein T08G5.9 protein.
Length = 233
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 216 NELFRLIYDVKGRSQSTVSPLRRLSTSCVKSSVWRPDLR 332
+E+ +++ D+KGRSQ SP+ + +S SS P +
Sbjct: 187 SEMEKIVIDIKGRSQE--SPIHSIPSSSGSSSTSSPSAK 223
>Z81589-4|CAB04721.1| 256|Caenorhabditis elegans Hypothetical
protein T08G5.8 protein.
Length = 256
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 216 NELFRLIYDVKGRSQSTVSPLRRLSTSCVKSSVWRPDLR 332
+E+ +++ D+KGRSQ SP+ + +S SS P +
Sbjct: 210 SEMEKIVIDIKGRSQE--SPIHSIPSSSGSSSTSSPSAK 246
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 364 HHPLSRPTYQSQRFHPVRHCNYEDYGLH 447
HH PTY F+P H +Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 197 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 60
N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 197 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 60
N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,194,672
Number of Sequences: 27780
Number of extensions: 388428
Number of successful extensions: 1148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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