Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00331
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.64 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.9  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 524 RDIPAPSTLCTSRTPRDTPSP 586
           RD+P  ST  T+   RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 524 RDIPAPSTLCTSRTPRDTPSP 586
           RD+P  ST  T    RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 558 DVHNVEGAGMSLAGHD 511
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 81  RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 182
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 555  HQGLHGTHLRHEVEQRVHNRQGTKAYISWPRGKG 656
            H G  G  + H      H+R G++   S PR  G
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQ---SMPRQNG 1785


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 497 GRVGPSCPARDIPAPSTLCTSRTPRDTPSPRG 592
           G   P  P    P+P+  C S T     SP+G
Sbjct: 734 GEASPRSPNAS-PSPAEQCASTTTITARSPQG 764


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = -1

Query: 525 LAGHDGPTRPKLRPPVIIHKFPDSNLMKSIIFVVAMSNWM 406
           L   D P +P   PP      PDS  +  I  +    N M
Sbjct: 332 LGDSDTPPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAM 371


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 91  YFRRFLRKITRGKHSRNLWGPVDGLGAY 8
           Y R  +R  T  +H ++    +DG+G Y
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGY 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,313
Number of Sequences: 438
Number of extensions: 4365
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)