Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00330
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             31   0.46 
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   4.2  
At5g07790.1 68418.m00892 expressed protein                             27   5.6  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   5.6  
At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) fa...    27   7.4  
At3g01270.1 68416.m00033 pectate lyase family protein similar to...    27   7.4  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 163 ISGSHARFQLSGNSGRKHSRCCTSILRKFSGGSIVS 270
           +SGS+  FQ S NS     R CTS++ K + GS+V+
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDK-TEGSVVA 149


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 73  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 171
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 94  SSCISGKRGRRCCNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSI 237
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 167 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 21
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


>At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 235

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 214 HSRC--CTSILRKFSGGSIVSQLTAAAMVAPTP*GDAKHHPFSKSLQD 351
           HS C  C S +  F+GG   S    A  ++    GD  HH  +++  D
Sbjct: 111 HSSCPLCRSQIEPFAGGVKSSMDEVAISISDPVYGDTNHHEGTETTGD 158


>At3g01270.1 68416.m00033 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 475

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 139 WHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFSGGSIVSQLTAAA 288
           W+W S   +  ++A F+ SGN   K S     ++ K   G  VS+LT  A
Sbjct: 416 WNWRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMI-KPKNGMAVSKLTKYA 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,799,592
Number of Sequences: 28952
Number of extensions: 164627
Number of successful extensions: 355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)