Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00329
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865           47   2e-05
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297           47   2e-05
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750           41   0.001
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104...    30   1.7  

>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
          Length = 131

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +2

Query: 53  GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 181
           G  G+   KT QA+V+ +Y+EP+ P Q   VVE+LG+YL+  G
Sbjct: 88  GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130


>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
          Length = 131

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +2

Query: 53  GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 181
           G  G+   KT QA+V+ +Y+EP+ P Q   VVE+LG+YL+  G
Sbjct: 88  GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130


>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
          Length = 131

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +2

Query: 53  GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 181
           G  G+   KT  ++++ +Y+EP+ P Q   +VE+LG+YLI  G
Sbjct: 88  GTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130


>08_01_0130 +
           1040696-1041049,1042135-1042275,1042422-1042673,
           1043797-1043904,1044289-1044593,1044720-1044841,
           1044979-1045225,1045308-1045365,1045414-1045530,
           1045718-1045753,1046492-1046554,1046958-1047047,
           1047241-1047399,1047475-1047596,1048145-1048217,
           1048307-1048375
          Length = 771

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 259 NALLISPWKKYYLIVLLDHGELRPLITTGN*IF 161
           NA+ +  +KKY L+ L+ +G++ PL+  G  IF
Sbjct: 548 NAIAVEAYKKYILVSLIQNGQI-PLLDKGESIF 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,551,388
Number of Sequences: 37544
Number of extensions: 331686
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)