Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00329
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           89   5e-20
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.0  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 88.6 bits (210), Expect = 5e-20
 Identities = 38/44 (86%), Positives = 43/44 (97%)
 Frame = +2

Query: 53  GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 184
           GKVGVHCMKT QAVV+SLYE+PIQPQQAASVVEKLG+YL++CGY
Sbjct: 83  GKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCGY 126



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 6   RYIYLSGTDHIIRAXLAR 59
           RYIYLSGTD +IRA L +
Sbjct: 67  RYIYLSGTDRVIRAKLGK 84


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 124 LDGFFIERNDHSLLCLH 74
           + G  IER DH++LC++
Sbjct: 327 ISGAPIERPDHAVLCVY 343


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 47  EXGKVGVHCMKTQQAVVIS 103
           E   +  HC+ T+Q+VV++
Sbjct: 815 EEKNINDHCVTTEQSVVVT 833


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,636
Number of Sequences: 438
Number of extensions: 4109
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)