Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00329
(744 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to p... 47 1e-05
At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to S... 45 6e-05
At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to p... 45 6e-05
At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identic... 43 2e-04
At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / aller... 41 8e-04
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 33 0.26
At1g12530.1 68414.m01451 hypothetical protein ; expression suppo... 29 4.3
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 28 5.7
At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putati... 28 7.5
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 27 9.9
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 27 9.9
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 27 9.9
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 27 9.9
At1g32660.1 68414.m04028 F-box family protein contains Pfam prof... 27 9.9
>At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to
profilin 4 SP:Q38905 GI:1353768 from [Arabidopsis
thaliana]
Length = 134
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/43 (51%), Positives = 28/43 (65%)
Frame = +2
Query: 53 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 181
G G+ KT Q++V LYEEP+ P Q VVE+LG+YLI G
Sbjct: 91 GAGGITIKKTGQSMVFGLYEEPVTPGQCNMVVERLGDYLIEQG 133
>At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to
SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
Length = 168
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = +2
Query: 53 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 181
G GV KT A+V +Y+EP+ P Q VVE LGEYLI G
Sbjct: 125 GAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVENLGEYLIESG 167
>At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to
profilin 3 SP:Q38904 GI:1353765 from [Arabidopsis
thaliana]
Length = 134
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 53 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 181
G G+ KT Q+ V +YEEP+ P Q VVE+LG+YL+ G
Sbjct: 91 GAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLLEQG 133
>At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identical
to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis
thaliana]; identical to cDNA profilin (PRF2) GI:9965570
Length = 131
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +2
Query: 53 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 181
G GV KT QA+V +Y+EP+ Q VVE+LG+YLI G
Sbjct: 88 GPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVERLGDYLIESG 130
>At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / allergen
Ara t 8 identical to profilin 1 (Allergen Ara t 8)
SP:Q42449 GI:1353770 from [Arabidopsis thaliana]
Length = 131
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +2
Query: 53 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLI 172
G GV KT QA+V Y+EP+ Q VVE+LG+YLI
Sbjct: 88 GPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLI 127
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3
Query: 556 TMMLDKKPKNLYTSCFFEISYAKLKMLHYDW--SIKAKF*YKFNSLCSNNYFEETVS 392
++ +D+KP+ CFF L L +W I F ++F++LCS+++ VS
Sbjct: 599 SVKVDRKPEVSCQGCFFGEELKSLVELETNWLMEIITVFLHQFDNLCSDHFHNNAVS 655
>At1g12530.1 68414.m01451 hypothetical protein ; expression
supported by MPSS
Length = 192
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 392 RIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIE 267
R+K ++ +NN + + S L+RH N+KT + S F E
Sbjct: 32 RLKENEDLRNNMISVVKESTSLKRHGAQNMKTRQLSDAIFEE 73
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 335 H*LRRHNLSNIKTNERSSYHFIEYTKCVTYFPVEKILSYS 216
H + ++L+ I R SY FI+Y CV P ++I S
Sbjct: 873 HRAKGNSLTIILNGYRPSYDFIQYLVCVVISPNQEITKIS 912
>At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putative
similar to pentacyclic triterpene synthase [gi:6650208]
[PMID:11247608]
Length = 759
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 370 GFWTLFIRSPSPQNNYYC-IMN*ICIKILLLLTSHSE 477
G W L + SPS N +C ++N IC++IL + H +
Sbjct: 164 GGWGLHVESPS---NMFCSVINYICLRILGVEAGHDD 197
>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
thaliana]
Length = 1505
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/62 (20%), Positives = 26/62 (41%)
Frame = -2
Query: 392 RIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIEYTKCVTYFPVEKILSYST 213
R+ +V +P+ N+ C + ++ K E YH++ +KC+ + Y
Sbjct: 243 RVCQVSDPERNYHCFYMLCA-APQEDVKKFKLEEPKKYHYLNQSKCLELDSINDAEEYHA 301
Query: 212 LR 207
R
Sbjct: 302 TR 303
>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 265 IQNALLISPWKKYYLIVLLDHGELRPLITT 176
IQ L PW KY + ++ D G +PL T+
Sbjct: 754 IQYNLCNEPWIKYSISIVADKGLKKPLFTS 783
>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 265 IQNALLISPWKKYYLIVLLDHGELRPLITT 176
IQ L PW KY + ++ D G +PL T+
Sbjct: 754 IQYNLCNEPWIKYSISIVADKGLKKPLFTS 783
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = -2
Query: 401 DGERIKR---VQNPQNNHMCTLNS---SH*LRRHNLSNIKTNERSSYHFIEYTKCVTYFP 240
D ++KR + + N++CT + L + S++KT+ + +YH Y+ CV +
Sbjct: 121 DSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQENYHICPYSGCVKRYA 180
Query: 239 VE 234
E
Sbjct: 181 HE 182
>At1g32660.1 68414.m04028 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 446
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 691 CYSNFITWLLQILFKHQYKKQS 626
C S+F+ W+L+ KH++ +QS
Sbjct: 322 CISSFVFWILEDPKKHEWSRQS 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,156
Number of Sequences: 28952
Number of extensions: 282392
Number of successful extensions: 553
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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