Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00328
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   133   2e-32
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   133   3e-32
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   126   4e-30
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    27   2.4  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   2.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.2  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   5.6  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   7.5  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    25   7.5  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  133 bits (322), Expect = 2e-32
 Identities = 73/162 (45%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
 Frame = +2

Query: 11  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQTQHLWQLL*EQTQ--AYVIPA*EV 184
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE+          + +  AY+  A   
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 185 QRESCSWTFPF*SSI*DSMEDCKSMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 364
                ++ F   S I    +  + M+PHKT RG+ AL  L+  +G PPPFD         
Sbjct: 66  NPSRGAFHFRAPSRI--FQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPA 123

Query: 365 XXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 490
                 LKPGR YC VGRLS E+GWKY D+V KLE++RK K+
Sbjct: 124 ALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKS 165


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  133 bits (321), Expect = 3e-32
 Identities = 73/162 (45%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
 Frame = +2

Query: 11  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQTQHLWQLL*EQTQ--AYVIPA*EV 184
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE+          + +  AY+  A   
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 185 QRESCSWTFPF*SSI*DSMEDCKSMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 364
                ++ F   S I    +  + M+PHKT RG+ AL  L+  +G PPPFD         
Sbjct: 66  NPSRGAFHFRAPSRI--FQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPA 123

Query: 365 XXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 490
                 LKPGR YC VGRLS E+GWKY D+V KLE++RK K+
Sbjct: 124 ALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKS 165


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  126 bits (303), Expect = 4e-30
 Identities = 67/162 (41%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
 Frame = +2

Query: 11  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQTQHLWQLL*EQTQ--AYVIPA*EV 184
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE+          + +  AY+  A   
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 185 QRESCSWTFPF*SSI*DSMEDCKSMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 364
                ++ F   S I    +  + M+PHKT RG  AL+ L+  +G PPPFD         
Sbjct: 66  NPSRGAFHFRAPSRI--FTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPA 123

Query: 365 XXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 490
                 LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 124 ALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 22/99 (22%), Positives = 43/99 (43%)
 Frame = -1

Query: 371 VEQQALQHVDGYQREEGTHHMYVAS*EHSCHALFCVGSYSYSLP*NLRWSSKMERSTSRI 192
           +++   Q  D +++EEG H   + S   S   +  +    Y++   +R    +     +I
Sbjct: 156 IDEMNSQEYDVFEKEEGNHKNSIYSIVSSLAIILGLVGLPYAI---IRLFKNIYEKEKQI 212

Query: 191 HVAPLTQE*HKLEFVPKEVARDVEFVRSEPQQLCSLREG 75
             A + ++   LEF       D EF+  +P    SL++G
Sbjct: 213 QQAKIRKKIDSLEF----CKADYEFMSRDPGVEMSLKKG 247


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 362 QALQHVDGYQREEGTHHMYVAS*EHSCHALFCVGSYSYSLP 240
           +AL H   Y      HH ++    +S HA   +  YS SLP
Sbjct: 171 RALHHRWLYAPLHKLHHKWIVPTPYSSHAFHYLDGYSQSLP 211


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 324 GHPSYVRSLLRAFLPRSVLCGIILLQSSI 238
           G+ SY+ + L+AFLP++V C  +   S+I
Sbjct: 381 GNESYLSNFLKAFLPKTV-CDYLFPSSTI 408


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 455  VRKLEDKRKGKAVKRVAYKRNLR 523
            V++L+D  KGKA K  A K+N R
Sbjct: 1100 VQELDDSSKGKAGKMPASKKNKR 1122


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 347 VDGYQREEGTHHMYVAS*EHSCHALFCVGSYSYSLP 240
           V+GYQ+EEG   + V S    C  +  + S  +SLP
Sbjct: 30  VEGYQKEEGKFKL-VLSILKQCIGVKDIASLRFSLP 64


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -2

Query: 205 PRAGFTLHLLRRNDISLSLFLKKLP--EMLSLFAANHNNFVPFEK 77
           P  G   H+LR +   LS +LKK P  E++     N N  V  +K
Sbjct: 219 PNLGIFTHILRNSRNDLSNYLKKRPYREVIESSLYNRNVSVACKK 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,475
Number of Sequences: 5004
Number of extensions: 54251
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)