Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00328
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 128 4e-30
07_01_0071 - 522920-523063,524125-524212,524289-524677 124 6e-29
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 71 6e-13
11_04_0056 + 12942802-12942920,12943022-12943115 58 5e-09
04_03_0232 - 13049649-13052807 31 0.83
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 29 2.5
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 29 2.5
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 28 5.9
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 128 bits (309), Expect = 4e-30
Identities = 68/166 (40%), Positives = 95/166 (57%)
Frame = +2
Query: 17 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQTQHLWQLL*EQTQAYVIPA*EVQRES 196
+V+D R H+LGRLA++IAK LL G +VVVVRCE+ L+ ++ + + +
Sbjct: 12 VVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71
Query: 197 CSWTFPF*SSI*DSMEDCKSMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 376
F S + MIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 72 SHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 131
Query: 377 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYKR 514
L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAY R
Sbjct: 132 LRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA--KVAYDR 175
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 124 bits (299), Expect = 6e-29
Identities = 65/168 (38%), Positives = 95/168 (56%)
Frame = +2
Query: 11 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQTQHLWQLL*EQTQAYVIPA*EVQR 190
+ +V+D R H+LGRLA+++AK LL G +VVVVRCE+ L+ ++ + +
Sbjct: 10 RRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNT 69
Query: 191 ESCSWTFPF*SSI*DSMEDCKSMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 370
+ F + + MIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 70 KPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDAL 129
Query: 371 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYKR 514
L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAY+R
Sbjct: 130 KVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYER 175
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +3
Query: 87 GTKLLWFAANKLNISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVR 254
G +++ ++ ISG R K+K + FLRKR N P+ GP HFRAPS+I W+TVR
Sbjct: 35 GQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVR 90
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/70 (42%), Positives = 41/70 (58%)
Frame = +2
Query: 251 KSMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 430
+ MIPHKT+RG+ AL RL+ Y+ PP+D L+PG YC +G+LS E
Sbjct: 24 RGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 83
Query: 431 IGWKYRDVVR 460
+GW Y D +R
Sbjct: 84 VGWNYYDTIR 93
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 186 NVNPARGPFHFRAPSKILWKTVR 254
N P+ GP HFR+P+KILW+TVR
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVR 24
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 278 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 445
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 488 PCPSSCLQAYEQHHGISIQFHGTVCLH 408
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 458 RKLEDKRKGKAVKRVAYKRNLRGS 529
R+ DK K VK+V+YKRN GS
Sbjct: 109 RRRSDKGKRSGVKKVSYKRNYDGS 132
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 407 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY-KRNLRGSPRMLVR 547
H G E G +VVR L D +GKAV+R+ R LR P L R
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLGR 212
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 446 RDVVRKLEDKRKGKAVKRVAYKRNLRGSPRMLVRRCRRRQHH 571
R + RK+++ + V+ +A + + G +VRRC RR++H
Sbjct: 117 RKIGRKIQELNR--RVEEIAKRSSRFGFVSQIVRRCHRRRYH 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,268,822
Number of Sequences: 37544
Number of extensions: 381104
Number of successful extensions: 1083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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