Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00328
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_40739| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-28) 29 2.6
SB_30911| Best HMM Match : TT_ORF2 (HMM E-Value=1.1) 29 3.4
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 29 3.4
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1) 29 4.5
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2) 29 4.5
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 29 4.5
SB_54570| Best HMM Match : DAD (HMM E-Value=7) 28 6.0
SB_37068| Best HMM Match : DAD (HMM E-Value=7) 28 6.0
SB_33168| Best HMM Match : DAD (HMM E-Value=7) 28 6.0
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 28 7.9
SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 28 7.9
SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08) 28 7.9
>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 44.8 bits (101), Expect = 6e-05
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +2
Query: 257 MIPHKTERGKNALRRLRTYDGCPPPFD 337
MIPHKT++G A+ R++ +DG PPP+D
Sbjct: 1 MIPHKTKKGTEAMNRMKVFDGVPPPYD 27
>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 33.5 bits (73), Expect = 0.16
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 467 EDKRKGKAVKRVAYKRNLRGSPRMLVRRCR-RRQHHSLPSSNPMDTIRTKKL*PKINLL 640
E K K A K+ A K+ SP+ RR R RR+H SLP + + K L PK NLL
Sbjct: 93 EKKPKKPAAKKPAAKKPAAKSPQQSPRRSRQRRRHQSLPRKQQRNPL-PKNLLPK-NLL 149
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -1
Query: 233 LRWSSKMERSTSRIHVAPLTQE*HKLEFVPKEVARDVEFVRSEPQQLC 90
L W++++ RST ++++PL + V+ D+ QQLC
Sbjct: 1722 LEWNTQLWRSTQEVYISPLVSAFDLRFILAPAVSMDITVATDTGQQLC 1769
>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -1
Query: 233 LRWSSKMERSTSRIHVAPLTQE*HKLEFVPKEVARDVEFVRSEPQQLC 90
L W++++ RST ++++PL + V+ D+ QQLC
Sbjct: 394 LEWNTQLWRSTQEVYISPLVSAFDLRFILAPAVSMDITVATDTGQQLC 441
>SB_40739| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-28)
Length = 327
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 587 WMMVVNGVVAFDTFSPASLVILLSFFYRQLS*QPCPS 477
W ++ G++AF T LVI L F + L QP P+
Sbjct: 29 WYWILRGLIAFITIFGNGLVIYLVSFRKPLRDQPSPN 65
>SB_30911| Best HMM Match : TT_ORF2 (HMM E-Value=1.1)
Length = 263
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +1
Query: 67 RQGPSRREQSCCGSLRTNSTSLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFYG 243
+Q R+E+SC + T L SL NS LC + + VD L LR YG
Sbjct: 204 QQAGFRKERSCTDQIATLRIILEQSLQWNSPLCVNFIDYEKAFDSVDRQTLRRLLRHYG 262
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +1
Query: 67 RQGPSRREQSCCGSLRTNSTSLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFYG 243
+Q R+E+SC + T L SL NS LC + + VD L LR YG
Sbjct: 229 QQAGFRKERSCTDQIATLRIILEQSLQWNSPLCVNFIDYEKAFDSVDRQTLRRLLRHYG 287
>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1054
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +1
Query: 67 RQGPSRREQSCCGSLRTNSTSLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFYG 243
+Q R+E+SC + T L SL NS LC + + VD L LR YG
Sbjct: 667 QQAGFRKERSCTDQIATLRIILEQSLQWNSPLCVNFIDYEKAFDSVDRQTLRRLLRHYG 725
>SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1)
Length = 386
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 202 RAGFTLHLLRRNDISLSLFLKKLPEMLS 119
R G LHL R DI L LFL +L +S
Sbjct: 231 RIGIELHLFVRRDIELHLFLLQLARKIS 258
>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
Length = 622
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 389 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 505
PG C VG+L H W + R L R+ + ++ A
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 445
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 389 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 505
PG C VG+L H W + R L R+ + ++ A
Sbjct: 866 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 904
>SB_54570| Best HMM Match : DAD (HMM E-Value=7)
Length = 134
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 482 GKAVKRV-AYKRNLRGSPRMLVRRCRRRQHHSLPSSNPMDTIR 607
GK+ +R+ A +R +RG +L+R R + H+ P+S + I+
Sbjct: 67 GKSTERLTALERTVRGLRELLLRTKERTKAHNKPTSRSQNLIK 109
>SB_37068| Best HMM Match : DAD (HMM E-Value=7)
Length = 134
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 482 GKAVKRV-AYKRNLRGSPRMLVRRCRRRQHHSLPSSNPMDTIR 607
GK+ +R+ A +R +RG +L+R R + H+ P+S + I+
Sbjct: 67 GKSTERLTALERTVRGLRELLLRTKERTKAHNKPTSRSQNLIK 109
>SB_33168| Best HMM Match : DAD (HMM E-Value=7)
Length = 134
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 482 GKAVKRV-AYKRNLRGSPRMLVRRCRRRQHHSLPSSNPMDTIR 607
GK+ +R+ A +R +RG +L+R R + H+ P+S + I+
Sbjct: 67 GKSTERLTALERTVRGLRELLLRTKERTKAHNKPTSRSQNLIK 109
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 413 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 306
+H S + +V ++H+E +A H Y R + H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355
>SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 187 LHLLRRNDISLSLFLKKLPEMLSLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGL 11
LHL ++ L L P S+F N + F + +D G ++ + TT DH+ L
Sbjct: 1085 LHLKEHVELPPPLHLWNTPPNGSMFLINRHEFRDYRRD-GYTWKKRTKSTTTREDHFKL 1142
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 404 CHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYKRNLRGSPRML 541
CH+ +L E + R+ RK E+KR+ A KR +RNL+ R+L
Sbjct: 397 CHMQKLETEE--ENRE--RKREEKRRRGAEKRAKRRRNLQTGSRIL 438
>SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)
Length = 421
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +1
Query: 67 RQGPSRREQSCCGSLRTNSTSLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFYG 243
+Q R+E+SC + T L SL NS LC + + VD L LR YG
Sbjct: 23 QQAGFRKEKSCTDQIATLCIILEQSLQWNSPLCVNFIDYEKAFDSVDRQTLWRLLRHYG 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,721,312
Number of Sequences: 59808
Number of extensions: 429365
Number of successful extensions: 1810
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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