Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00328
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 114 4e-26
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 114 6e-26
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 113 1e-25
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 111 4e-25
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 29 3.7
At2g38770.1 68415.m04760 expressed protein 28 6.5
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t... 27 8.5
At1g74360.1 68414.m08615 leucine-rich repeat transmembrane prote... 27 8.5
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 114 bits (275), Expect = 4e-26
Identities = 61/168 (36%), Positives = 92/168 (54%)
Frame = +2
Query: 11 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQTQHLWQLL*EQTQAYVIPA*EVQR 190
K +V+D R H+LGRLA+V+AK LL G +VVVRCE+ L+ ++ + +
Sbjct: 10 KRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNT 69
Query: 191 ESCSWTFPF*SSI*DSMEDCKSMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 370
+ F + + MIPHKT+RG NAL RL+ ++G P P+D
Sbjct: 70 KPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDAL 129
Query: 371 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYKR 514
L+ G YC +GRLS E+GW + D +++LE+KRK +A + Y+R
Sbjct: 130 KVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERA--QAVYER 175
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = +3
Query: 87 GTKLLWFAANKLNISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVR 254
G ++ ++ +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVR
Sbjct: 35 GQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVR 90
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 114 bits (274), Expect = 6e-26
Identities = 62/169 (36%), Positives = 91/169 (53%)
Frame = +2
Query: 8 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQTQHLWQLL*EQTQAYVIPA*EVQ 187
+K +V+D R H+LGRLA++ AK LL G KVV+VRCE+ L+ ++ + +
Sbjct: 9 SKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMN 68
Query: 188 RESCSWTFPF*SSI*DSMEDCKSMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 367
+ F + + MIPHKT+RG AL RL+ Y+G P P+D
Sbjct: 69 TKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDA 128
Query: 368 XXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYKR 514
L+ G YC +GRLS E+GW + D +++LE KRK +A V Y+R
Sbjct: 129 LKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERA--HVVYER 175
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/56 (51%), Positives = 37/56 (66%)
Frame = +3
Query: 87 GTKLLWFAANKLNISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVR 254
G K++ ++ +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVR
Sbjct: 35 GQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVR 90
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 113 bits (271), Expect = 1e-25
Identities = 62/168 (36%), Positives = 92/168 (54%)
Frame = +2
Query: 11 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQTQHLWQLL*EQTQAYVIPA*EVQR 190
K +V+DGR H+LGRLA+ AK LL G +VVVVRCE+ L+ ++ + +
Sbjct: 10 KRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNT 69
Query: 191 ESCSWTFPF*SSI*DSMEDCKSMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 370
+ F + + MIPHKT+RG AL RL+ ++G PPP+D
Sbjct: 70 KPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDAL 129
Query: 371 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYKR 514
L+ G YC +GRLS E+GW + D +++LE KRK ++ +V Y+R
Sbjct: 130 KVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERS--QVMYER 175
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 63 SSPRSFSKGTKLLWFAANKLNISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILW 242
++ + G +++ ++ +SG R K+K M FLRKR N P+ GP HFRAPSKI W
Sbjct: 27 NTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFW 86
Query: 243 KTVR 254
+TVR
Sbjct: 87 RTVR 90
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 111 bits (267), Expect = 4e-25
Identities = 60/171 (35%), Positives = 90/171 (52%)
Frame = +2
Query: 8 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQTQHLWQLL*EQTQAYVIPA*EVQ 187
+K +V+D R H+ GRLA++IAK LL G VVVVRCE+ L+ ++ + +
Sbjct: 9 SKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMN 68
Query: 188 RESCSWTFPF*SSI*DSMEDCKSMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 367
+ F + + MIPHKT+RG AL RL+ ++G PPP+D
Sbjct: 69 TKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDA 128
Query: 368 XXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYKRNL 520
L+ G YC +GRLS E+GW + D +++LE KRK ++ K+ L
Sbjct: 129 LKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQL 179
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = +3
Query: 87 GTKLLWFAANKLNISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVR 254
G ++ ++ +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVR
Sbjct: 35 GQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVR 90
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -2
Query: 253 LTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEM 125
L + H LD + W+G + LH LR+ D+S S+ LK+LP++
Sbjct: 658 LNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695
>At2g38770.1 68415.m04760 expressed protein
Length = 1509
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 93 KLLWFAANKLNISGNFFRNKLKLMSFLRKRCNVNPARGP 209
+LL + ANK++I + KL + + +RC P GP
Sbjct: 1276 RLLGYPANKISILTTYNGQKLLIRDVINRRCVPYPFIGP 1314
>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 610
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 105 FAANKLNISGNFF-RNKLKLMSFLRKRCNVNPARGPFHFRAPSK 233
FA N+L + + R K+ + L +R N+ P+R +HF SK
Sbjct: 278 FACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSK 321
>At1g74360.1 68414.m08615 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive
1 GB:AAC49810 (putative receptor protein kinase);
contains Pfam profiles: PF00560 Leucine Rich Repeat (17
repeats), PF00069 Eukaryotic protein kinase domain
Length = 1106
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = +3
Query: 63 SSPRSFSKGTKLLWFAANKLNISGNFFRNKLKLMSFLRKRCNVNPARGPFH 215
S P SF K T LLW ++SG R S L N G FH
Sbjct: 436 SIPASFGKLTSLLWLMLANNSLSGEIPREIGNCTSLLWFNVANNQLSGRFH 486
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,471,224
Number of Sequences: 28952
Number of extensions: 300367
Number of successful extensions: 846
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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