Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00326
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 77 1e-14
AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 4.1
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 4.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.1
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 4.1
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 28 5.5
U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical pr... 28 5.5
U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna bind... 28 5.5
AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna bi... 28 5.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 7.2
U49954-5|AAA93427.2| 445|Caenorhabditis elegans Odorant respons... 27 9.6
U49954-4|AAN84809.1| 473|Caenorhabditis elegans Odorant respons... 27 9.6
U49954-3|AAN84808.1| 475|Caenorhabditis elegans Odorant respons... 27 9.6
AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear recep... 27 9.6
AF055911-1|AAC39022.1| 445|Caenorhabditis elegans odorant respo... 27 9.6
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Frame = +2
Query: 56 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 229
M IYKDI T DE+ SD++ MKLVD+++YE G+ V R +G+I + G NPSAEE D+G+
Sbjct: 1 MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGS 60
Query: 230 DSAVESGV 253
D VE G+
Sbjct: 61 DEHVERGI 68
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Frame = +1
Query: 256 IVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQ--VEVFKTNMNKVMKDILG 429
IVLNH+LVE + D + Y+K +MK ++ +E+ D+ V+ FK + + +L
Sbjct: 70 IVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLA 129
Query: 430 --RFKELQFFTGESM---DCDGMVAMMEYRDL 510
RFK L FF GE +G VA++EYRD+
Sbjct: 130 KDRFKNLAFFIGERAAEGAENGQVAIIEYRDV 161
>AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical
protein F52F10.2 protein.
Length = 508
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 408 FVHVCFKYFNLVRRLLFQFCY*FFHI 331
F+++C +Y RR L FCY F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 301 KKSYTLYLKDYMKKLVAKLEEK 366
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 301 KKSYTLYLKDYMKKLVAKLEEK 366
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 283 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 447
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 283 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 447
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 301 KKSYTLYLKDYMKKLVAKLEEK 366
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 298 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKE 441
+KK+ L L +K + K+EEKA K+ ++K +KD L R K+
Sbjct: 22 EKKAKGLKLNKVDRKRIVKIEEKA-----ALKSKVDKAVKDELERLKK 64
>U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical
protein F09F9.5 protein.
Length = 219
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 360 FQFCY*FFHIVFEVQCVGFLVTEGVCF 280
+Q C+ F H+ +GF GVCF
Sbjct: 53 YQTCFGFMHVKIATCSIGFFALLGVCF 79
>U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna binding
factor protein 2 protein.
Length = 632
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 562 RNSKC*IRNNSIIPNWRLDTFG 627
RNS+ R+N+++P W LD+ G
Sbjct: 156 RNSRSFTRSNNVLPTWSLDSNG 177
>AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna
binding factor protein 1 protein.
Length = 614
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 562 RNSKC*IRNNSIIPNWRLDTFG 627
RNS+ R+N+++P W LD+ G
Sbjct: 154 RNSRSFTRSNNVLPTWSLDSNG 175
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 346 LIFSYSL*GTMCRISCHRRRMFRLACGSGLCNSALDGRVRALVS 215
++FSY L G + SC R+ R G+ + LD + A+VS
Sbjct: 2939 IVFSYCLAGAVFFTSCKMIRILRFNRRIGVLAATLDNALGAIVS 2982
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 346 LIFSYSL*GTMCRISCHRRRMFRLACGSGLCNSALDGRVRALVS 215
++FSY L G + SC R+ R G+ + LD + A+VS
Sbjct: 2939 IVFSYCLAGAVFFTSCKMIRILRFNRRIGVLAATLDNALGAIVS 2982
>U49954-5|AAA93427.2| 445|Caenorhabditis elegans Odorant response
abnormal protein4, isoform a protein.
Length = 445
Score = 27.5 bits (58), Expect = 9.6
Identities = 7/35 (20%), Positives = 22/35 (62%)
Frame = -1
Query: 106 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFS 2
+++ HL+ + ++LH++ +E ++ ++ K G +
Sbjct: 298 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGIT 332
>U49954-4|AAN84809.1| 473|Caenorhabditis elegans Odorant response
abnormal protein4, isoform c protein.
Length = 473
Score = 27.5 bits (58), Expect = 9.6
Identities = 7/35 (20%), Positives = 22/35 (62%)
Frame = -1
Query: 106 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFS 2
+++ HL+ + ++LH++ +E ++ ++ K G +
Sbjct: 326 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGIT 360
>U49954-3|AAN84808.1| 475|Caenorhabditis elegans Odorant response
abnormal protein4, isoform b protein.
Length = 475
Score = 27.5 bits (58), Expect = 9.6
Identities = 7/35 (20%), Positives = 22/35 (62%)
Frame = -1
Query: 106 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFS 2
+++ HL+ + ++LH++ +E ++ ++ K G +
Sbjct: 328 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGIT 362
>AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 433
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 522 FAYHQVSIFHHGNHAITIHGLPSK 451
F +H + + H GNH + IH L S+
Sbjct: 2 FFFHILRVLHFGNHVLIIHLLNSQ 25
>AF055911-1|AAC39022.1| 445|Caenorhabditis elegans odorant response
protein ODR-4 protein.
Length = 445
Score = 27.5 bits (58), Expect = 9.6
Identities = 7/35 (20%), Positives = 22/35 (62%)
Frame = -1
Query: 106 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFS 2
+++ HL+ + ++LH++ +E ++ ++ K G +
Sbjct: 298 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGIT 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,177
Number of Sequences: 27780
Number of extensions: 317007
Number of successful extensions: 877
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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