Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00326
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    56   2e-08
At3g05540.1 68416.m00607 translationally controlled tumor family...    53   2e-07
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    34   0.077
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    31   0.72 
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    29   2.9  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    28   5.1  
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    27   8.9  
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    27   8.9  
At1g34460.1 68414.m04281 cyclin, putative strong similarity to c...    27   8.9  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
 Frame = +2

Query: 56  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 226
           M +Y+D++TGDE+ SD++  K ++  +++EV G+ VT    D+ I G NPSAEE   DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59

Query: 227 TDSAVESGV 253
            D + +  V
Sbjct: 60  VDDSTQKVV 68



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 32/84 (38%), Positives = 43/84 (51%)
 Frame = +1

Query: 256 IVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRF 435
           IV   RL E   + DKK +  Y+K Y+K L  KL E+  DQ  VFK  +    K +L R 
Sbjct: 70  IVDTFRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRL 125

Query: 436 KELQFFTGESMDCDGMVAMMEYRD 507
            + QFF GE M  D  +    Y++
Sbjct: 126 SDFQFFVGEGMHDDSTLVFAYYKE 149


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 IVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRF 435
           I+   RL E  +F DKK + +++K Y+K+L  KL+    +  E+FK ++    K ++ + 
Sbjct: 57  IIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIESATKFLMSKL 112

Query: 436 KELQFFTGESMDC-DGMVAMMEYRD 507
           K+ QFF GESM+  +G +    YR+
Sbjct: 113 KDFQFFVGESMEGEEGSLVFAYYRE 137



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +2

Query: 56  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSA 208
           M +Y+DI+TGDE+ SD++  K ++  +++EV G+  +  +G  + EG +  A
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKNPSGEEGG-EDEGVDDQA 51


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 83  GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 250
           G+   S   K +++D V+  +T  G  +T  +G+   EGF P+AEEAD+G  S +  G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 328 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 471
           D M+  + KL    P  +EVFK+N N + ++    F ++  FF GE  D
Sbjct: 226 DKMEVKLLKLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 166 SRHQPTGHFVNNFIDQFHFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 11
           SRHQP+   V    D     +  E   T+ + + +LHFDG     N  N  N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
 Frame = +1

Query: 400 MNKVMKDILGRFKELQFFTGE---SMDCDGM---VAMMEYRDLMVRK 522
           +NK++KDI+ R+K LQ +  +     DC G+   + +++  D  VRK
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGLPIELKVLQSLDQEVRK 213


>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 514 PSSLYIPSWQPCHHNPWTP 458
           P   + P WQP H N W P
Sbjct: 79  PPQNHYPPWQPHHGNQWRP 97


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 514 PSSLYIPSWQPCHHNPWTP 458
           P   + P WQP H N W P
Sbjct: 79  PPQNHYPPWQPHHGNQWRP 97


>At1g34460.1 68414.m04281 cyclin, putative strong similarity to
           cyclin [Arabidopsis thaliana] GI:1360646
          Length = 504

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +1

Query: 337 KKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDLMV 516
           K LV K + K    VEV +T  N   K   G   + +    +  D D  VA +EY D M 
Sbjct: 221 KNLVVKQQTKP---VEVIETKRNAQSKAACGIVNKPKILDIDESDKDNHVAAVEYVDDMY 277

Query: 517 RKYQ 528
             Y+
Sbjct: 278 SFYK 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,765,239
Number of Sequences: 28952
Number of extensions: 296932
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)