Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00325
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   105   5e-24
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   103   2e-23
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    31   0.16 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.37 
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   2.0  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   2.6  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.6  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   6.0  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    26   6.0  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   8.0  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   8.0  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  105 bits (253), Expect = 5e-24
 Identities = 47/76 (61%), Positives = 57/76 (75%)
 Frame = +2

Query: 17  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 196
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 197 MQVCVLGDQQHCDEAK 244
           M +C+LGD    D AK
Sbjct: 62  MSICILGDAHDLDRAK 77



 Score = 82.2 bits (194), Expect = 7e-17
 Identities = 39/53 (73%), Positives = 44/53 (83%)
 Frame = +1

Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 504
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCL 164



 Score = 75.4 bits (177), Expect = 8e-15
 Identities = 35/50 (70%), Positives = 41/50 (82%)
 Frame = +3

Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
           AVGHVDM  ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 167 AVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  103 bits (248), Expect = 2e-23
 Identities = 47/76 (61%), Positives = 58/76 (76%)
 Frame = +2

Query: 17  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 196
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 197 MQVCVLGDQQHCDEAK 244
           M +C+LGD    D AK
Sbjct: 62  MAICILGDAHDLDRAK 77



 Score = 82.6 bits (195), Expect = 5e-17
 Identities = 39/53 (73%), Positives = 44/53 (83%)
 Frame = +1

Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 504
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCL 164



 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 32/50 (64%), Positives = 41/50 (82%)
 Frame = +3

Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
           AVGHV+M+ ++L  N+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 167 AVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 581 HKEVDGKMHILSKLIRSHVHMANCSERHNTFFIWNLMVPLTSSIFCV 441
           ++++D    +L   +   VH+   S R NT F + L + ++  IFC+
Sbjct: 228 NEQLDSNFTLLDAYLEPLVHLHEYSRRSNTLFFFYLPIVMSILIFCL 274


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +2

Query: 2    TNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 163
            T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 921  TSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 516 GHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 635
           GHV  T  ELA+NV   + F+   ++    + + S+H+K++
Sbjct: 204 GHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 564 KDAHSEQAHQESCPHGQLLRKTQH 493
           K  H    H+E C HG+ LR   H
Sbjct: 358 KPDHKPWKHEEHCHHGKFLRPVPH 381


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 527 HDS**ACSECASFHQLPCVTAQETLAEC 610
           H S  + S   ++HQL CV  Q+ L+EC
Sbjct: 52  HPSINSLSSFQTYHQLLCVLEQKHLSEC 79


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -1

Query: 239 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 60
           P H  A LQE   A  AA+    L+ ++NA    G +S D  +AL  P    S      +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373

Query: 59  RHSRTRRACH 30
            HS+++ + H
Sbjct: 374 SHSQSQNSLH 383


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 462 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 355
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 534 PDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY*FNTINFMT 686
           P E  +N H+   +  ++L+ HW+ + SL M++     Q    F+ +NFMT
Sbjct: 30  PSEEQRNEHVLKKWENNVLR-HWKILFSLFMQTCGDSVQGNAAFSILNFMT 79


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 390 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGVV 500
           F + W I P+ SLP G H +E          PN+EG V
Sbjct: 36  FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 8   KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 106
           K   K   DT+ E   A LQSS DK  NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 50  VNAVLQSSKDKKRNFLETV 106
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,089
Number of Sequences: 5004
Number of extensions: 62252
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)