Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00325
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 112 2e-25
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 111 5e-25
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 110 1e-24
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 109 2e-24
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 40 0.003
04_04_0401 - 24946801-24947562 38 0.010
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 36 0.024
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 30 2.1
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547... 29 4.8
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 4.8
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 4.8
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 8.3
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 112 bits (270), Expect = 2e-25
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +2
Query: 17 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 196
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 197 MQVCVLGDQQHCDEAKTL 250
M+VC+LGD QH +EA+ +
Sbjct: 62 MKVCMLGDAQHVEEAEKM 79
Score = 68.5 bits (160), Expect = 5e-12
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 22/75 (29%)
Frame = +1
Query: 346 SESLIKQIPRLLGPGLNKAGK----------------------FPGLLSHQESMTQKIDE 459
SE++IKQIPRLLGPGLNKAGK FP L++HQES+ K++E
Sbjct: 112 SEAIIKQIPRLLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNE 171
Query: 460 VKGTIKFQMKKVLCL 504
K T+KFQ+KKVLC+
Sbjct: 172 TKATVKFQLKKVLCM 186
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/50 (58%), Positives = 39/50 (78%)
Frame = +3
Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
AVG+ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMG R++
Sbjct: 189 AVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVIRVF 238
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 111 bits (267), Expect = 5e-25
Identities = 47/78 (60%), Positives = 64/78 (82%)
Frame = +2
Query: 17 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 196
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 197 MQVCVLGDQQHCDEAKTL 250
++VC+LGD QH +EA+ +
Sbjct: 62 LKVCMLGDAQHVEEAEKM 79
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/53 (62%), Positives = 43/53 (81%)
Frame = +1
Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 504
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCM 159
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/50 (58%), Positives = 39/50 (78%)
Frame = +3
Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
AVG+ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMG R++
Sbjct: 162 AVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVYRVF 211
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 110 bits (264), Expect = 1e-24
Identities = 49/78 (62%), Positives = 62/78 (79%)
Frame = +2
Query: 17 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 196
SK+ + L E ++ V+ K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 197 MQVCVLGDQQHCDEAKTL 250
M+VC+LGD QH +EA+ +
Sbjct: 62 MKVCMLGDAQHVEEAEKI 79
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/53 (62%), Positives = 43/53 (81%)
Frame = +1
Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 504
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCM 159
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/50 (58%), Positives = 41/50 (82%)
Frame = +3
Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
AVG++ M ++ QN+ +S+NFLVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 162 AVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPYRVF 211
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 109 bits (262), Expect = 2e-24
Identities = 49/77 (63%), Positives = 62/77 (80%)
Frame = +2
Query: 20 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 199
K+ + L E ++ V+ SK+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 21 KLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 80
Query: 200 QVCVLGDQQHCDEAKTL 250
+VC+LGD QH +EA+ +
Sbjct: 81 KVCMLGDAQHVEEAEKI 97
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/53 (62%), Positives = 43/53 (81%)
Frame = +1
Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 504
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+
Sbjct: 130 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCM 177
Score = 68.9 bits (161), Expect = 4e-12
Identities = 29/50 (58%), Positives = 41/50 (82%)
Frame = +3
Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
AVG++ M ++ QN+ +S+NFLVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 180 AVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 229
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 492 GVVSF*AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 632
G S VG +DM ++ +NV ++ V + K W NVRSLH+K+
Sbjct: 193 GTCSGIKVGRLDMKEEDTVENVMAAVEAAVENVPKKWANVRSLHLKA 239
>04_04_0401 - 24946801-24947562
Length = 253
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 513 VGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
VGH M +E +NV ++ + + + W+NVR+LH+K+ LY
Sbjct: 157 VGHAAMAREEAVENVVAAVEAAAACVPRKWRNVRALHVKAPESVALPLY 205
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 68 SSKDKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAK 244
S+ +KKRNF ETVE + L DP++ D+ G + L + ++V V + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
Query: 245 TLNGHV 262
V
Sbjct: 338 AAGADV 343
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 543 LAQNVHLSINFLVSLLKKH 599
+ + VHLS+NF++ L+KKH
Sbjct: 302 IVEGVHLSLNFVMGLMKKH 320
>09_06_0364 +
22554082-22554225,22554306-22554520,22554671-22554752,
22554976-22555371,22555553-22556293,22556420-22556551,
22556981-22557367
Length = 698
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 525 DMTPDELAQNVHLSINFLVSLLKKH 599
D + + VHLS+NF++ L++KH
Sbjct: 262 DRKESVVVEGVHLSLNFVMGLMRKH 286
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 493 PSSFGT*WFP*LHQSSASWTPGGREDQGIYQLCSNR 386
P F WFP +H ++ S R Q I+ +C N+
Sbjct: 493 PVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK 528
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 167 QCRRNACPSVGHSSSDQFEALQSPKS 90
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 200 AFSAAVCILALQCRRNACPSVGH 132
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,258,332
Number of Sequences: 37544
Number of extensions: 405236
Number of successful extensions: 1107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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