Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00325
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   115   4e-26
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    91   5e-19
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    91   5e-19
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    27   9.9  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   9.9  
AF026204-1|AAB71252.1|  152|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  115 bits (276), Expect = 4e-26
 Identities = 51/75 (68%), Positives = 62/75 (82%)
 Frame = +2

Query: 17  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 196
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 197 MQVCVLGDQQHCDEA 241
           M+VCV GDQ H DEA
Sbjct: 62  MKVCVFGDQHHLDEA 76



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 40/54 (74%), Positives = 48/54 (88%)
 Frame = +1

Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS 507
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLS
Sbjct: 112 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLS 165



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 37/50 (74%), Positives = 44/50 (88%)
 Frame = +3

Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
           AVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 167 AVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 40/54 (74%), Positives = 48/54 (88%)
 Frame = +1

Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS 507
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLS
Sbjct: 82  SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLS 135



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 37/50 (74%), Positives = 44/50 (88%)
 Frame = +3

Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
           AVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 137 AVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 30/39 (76%), Positives = 35/39 (89%)
 Frame = +2

Query: 125 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEA 241
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEA 46


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 40/54 (74%), Positives = 48/54 (88%)
 Frame = +1

Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS 507
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLS
Sbjct: 51  SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLS 104



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 37/50 (74%), Positives = 44/50 (88%)
 Frame = +3

Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
           AVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 106 AVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 197 MQVCVLGDQQHCDEA 241
           M+VCV GDQ H DEA
Sbjct: 1   MKVCVFGDQHHLDEA 15


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 492 LLHLELNGS--LDFINLLRHGLLVGEKTREFTSFVQTGTQQTGN 367
           + HLEL GS  L+FI LL    L  +K R+ T F   G    GN
Sbjct: 354 MAHLELKGSSELEFIQLL--DCLDAKKLRKLTIFATVGDVNNGN 395


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 74  KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 184
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 513 VGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 647
           VGH+  +  +L +N+   +  + S     + N+RS+++ ++ G P
Sbjct: 367 VGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 358 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 477
           I +IP   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


>AF026204-1|AAB71252.1|  152|Caenorhabditis elegans Hypothetical
           protein C30E1.7 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 512 CSERHNTFFIWNLMVPLTSSIFCVMDSWWERRPGNLPALFKPGPNKRGI 366
           CS    TF  WN M+  +S +F  + ++     G LP   KP P   G+
Sbjct: 58  CSYNFLTFKSWNSMMSASSLVFIGLLNF---LVGYLPCCKKPSPGPNGL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,679,099
Number of Sequences: 27780
Number of extensions: 363676
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)