Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00325
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 112 2e-25
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 112 2e-25
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 110 8e-25
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 105 2e-23
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 38 0.009
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 37 0.011
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 33 0.24
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.74
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane prote... 30 1.3
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.3
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.7
At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein si... 30 1.7
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.3
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.3
At1g30080.1 68414.m03677 glycosyl hydrolase family 17 protein si... 29 2.3
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 4.0
At5g13600.1 68418.m01574 phototropic-responsive NPH3 family prot... 28 6.9
At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger) fa... 27 9.2
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 112 bits (269), Expect = 2e-25
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +2
Query: 17 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 196
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 197 MQVCVLGDQQHCDEAKTL 250
M++C+LGD QH +EA+ +
Sbjct: 62 MKICMLGDAQHVEEAEKM 79
Score = 91.5 bits (217), Expect = 5e-19
Identities = 40/53 (75%), Positives = 48/53 (90%)
Frame = +1
Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 504
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCM 164
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/50 (66%), Positives = 43/50 (86%)
Frame = +3
Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
AVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 167 AVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 112 bits (269), Expect = 2e-25
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +2
Query: 17 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 196
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 197 MQVCVLGDQQHCDEAKTL 250
M++C+LGD QH +EA+ +
Sbjct: 62 MKICMLGDAQHVEEAEKM 79
Score = 91.5 bits (217), Expect = 5e-19
Identities = 40/53 (75%), Positives = 48/53 (90%)
Frame = +1
Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 504
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCM 164
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/50 (66%), Positives = 43/50 (86%)
Frame = +3
Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
AVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 167 AVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 110 bits (265), Expect = 8e-25
Identities = 47/78 (60%), Positives = 63/78 (80%)
Frame = +2
Query: 17 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 196
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 197 MQVCVLGDQQHCDEAKTL 250
M++C+LGD QH +EA+ +
Sbjct: 62 MKICMLGDAQHVEEAEKM 79
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/53 (75%), Positives = 48/53 (90%)
Frame = +1
Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 504
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCM 164
Score = 76.2 bits (179), Expect = 2e-14
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +3
Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
AVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 167 AVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 105 bits (253), Expect = 2e-23
Identities = 45/79 (56%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Frame = +2
Query: 17 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 193
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 194 KMQVCVLGDQQHCDEAKTL 250
KM++C+LGD QH +EA+ +
Sbjct: 62 KMKICMLGDAQHVEEAEKI 80
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/53 (75%), Positives = 48/53 (90%)
Frame = +1
Query: 346 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 504
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+
Sbjct: 113 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCM 165
Score = 73.7 bits (173), Expect = 1e-13
Identities = 31/50 (62%), Positives = 42/50 (84%)
Frame = +3
Query: 510 AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 659
AVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPP R++
Sbjct: 168 AVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 492 GVVSF*AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 629
G S VG + M E+ +NV ++N LV L W VRSLH+K
Sbjct: 204 GTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 513 VGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 629
V + M D++ +NV ++N +V +L W+ +RSLH+K
Sbjct: 191 VAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 492 GVVSF*AVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 629
G S V + M +E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 195 GTCSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 95 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 208
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein
kinase, putative
Length = 812
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 581 HKEVDGKMHILSKLIRSHVHMANCSERH 498
H E+ GK+ LSKL SH+HM + E H
Sbjct: 222 HNEISGKLPDLSKL--SHLHMLDLRENH 247
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 14 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 154
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 543 LAQNVHLSINFLVSLLKKH 599
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 397
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/83 (18%), Positives = 42/83 (50%)
Frame = +2
Query: 14 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 193
S ++++ +Y+ +L + + + T+E Q+ DPQ+ ++ + Y+P
Sbjct: 57 SLRITKTRIYDTNPQILSAFANSNIEIIVTIENQVLPLLQDPQQATQWVDSHIKPYVPAT 116
Query: 194 KMQVCVLGDQQHCDEAKTLNGHV 262
++ ++G++ D+ +L G++
Sbjct: 117 RITGIMVGNELFTDDDSSLIGYM 139
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 543 LAQNVHLSINFLVSLLKKH 599
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 543 LAQNVHLSINFLVSLLKKH 599
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At1g30080.1 68414.m03677 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 408
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +2
Query: 14 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 193
S +++ +Y+ VL S + TVE ++ DPQ+ ++ T Y P
Sbjct: 59 SLHINKTRIYDTNPRVLTSFANSNIELFVTVENEMLPSLVDPQQALQWVTTRIKPYFPAT 118
Query: 194 KMQVCVLGDQQHCDEAKTLNGHV 262
K+ +G++ + D+ +L G++
Sbjct: 119 KIGGIAVGNELYTDDDSSLIGYL 141
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 195 FGRGMYFSFTVPEKRLSFC 139
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At5g13600.1 68418.m01574 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000; contains
BTB/POZ domain, Pfam:PF00651
Length = 591
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 563 KMHILSKLIRSHVHMANCSERHNTFFIWNLMVP 465
++HI+S+ I S + M C+E + +FF W + +P
Sbjct: 156 ELHIVSRCIGS-LAMKACAEDNTSFFNWPISLP 187
>At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger) domain
Length = 359
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 494 CCVFLSSWPCGHDS**ACSECASFHQLPCVTAQETLAECPIIAYEINDGTTPE 652
CC+ LSS+ G + A FH V + A CP+ Y I GTT +
Sbjct: 307 CCICLSSYEDGAELH-ALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGTTDQ 358
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,582
Number of Sequences: 28952
Number of extensions: 335178
Number of successful extensions: 853
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -