Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00324X
(333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 0.57
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 1.3
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 1.3
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 2.3
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 2.3
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 2.3
SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces... 25 3.0
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 4.0
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 4.0
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 24 7.0
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 0.57
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 125 TVSKFTWRASDGFSVSVISYGATIQSIQV--PDKYGITSDVVLGFEKSTGTLTETHRT*G 298
T++ T SD ++ + + G T +++V P +T V G E T T T G
Sbjct: 199 TITLTTISGSDLYTSTFPANGTTSGTVEVVIPTAGTVTETAVSGSELYTSTFPANGTTSG 258
Query: 299 TLSADLPTS 325
T+ +PT+
Sbjct: 259 TVEVVIPTA 267
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 1.3
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -1
Query: 282 VSVNVPVD-FSKPRTTSLVIPYLSGT*IDCMVAPYEMTDTEKPS 154
VSVN+ + FSK ++V P++SGT I +V PY+ E S
Sbjct: 645 VSVNLKSNCFSKE---AIVSPFISGTKIKNLVYPYDEYQLEASS 685
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 122 ETVSKFTWRASDGFSVSVISYGAT 193
E +S+ A DG++VS+ +YG T
Sbjct: 554 EEISQLIQSAIDGYNVSIFAYGQT 577
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 2.3
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +2
Query: 185 GATIQSIQVPDKYGITSDVVLGFEKSTGTLTETHRT*GTL 304
G+T + +P + GITS V E + GT+TET T GTL
Sbjct: 99 GSTEYTTTIPAE-GITSGTVEIVEPTAGTVTET-ITSGTL 136
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.4 bits (53), Expect = 2.3
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 125 TVSKFTWRASDGFSVSVISYGATIQSIQV--PDKYGITSDVVLGFEKSTGTLTETHRT*G 298
T+++ S G++ + + G T +++V P IT +V G + T T + T G
Sbjct: 457 TITETIVSGSVGYTSTFPANGTTSGTVEVVEPTAGTITETIVSGSKTFTSTFPASGTTSG 516
Query: 299 TLSADLPTS 325
T+ PT+
Sbjct: 517 TVEVVEPTA 525
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 2.3
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +2
Query: 185 GATIQSIQVPDKYGITSDVVLGFEKSTGTLTETHRT*GTL 304
G+T + +P + GITS V E + GT+TET T GTL
Sbjct: 99 GSTEYTTTIPAE-GITSGTVEIVEPTAGTVTET-ITSGTL 136
>SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 72
Score = 25.0 bits (52), Expect = 3.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 50 RLNHSF*IINMVTLNVD 100
RLNHS +INM +NV+
Sbjct: 29 RLNHSLQLINMSNMNVE 45
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.6 bits (51), Expect = 4.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 247 GL*EIDGYVNRNTPYLGNIVGRFANK 324
G + Y + P+ G +GRFAN+
Sbjct: 402 GFNDFSRYKLKENPFFGATIGRFANR 427
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 24.6 bits (51), Expect = 4.0
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 268 YVNRNTPYLGNIVG 309
YVN N P+LGNIVG
Sbjct: 232 YVN-NVPHLGNIVG 244
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 264 VDFSKPRTTSLVIPYLSGT*IDCMVAPYEMTD 169
VD P +L+ PY SG+ + ++ PYE D
Sbjct: 668 VDNKFPPYPALLGPYSSGSTVKNLLYPYEEID 699
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,038
Number of Sequences: 5004
Number of extensions: 30697
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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