Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00324X
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 42 1e-04
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 40 4e-04
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 38 0.001
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 36 0.006
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 36 0.010
08_02_0632 + 19515234-19515374,19515489-19515656,19518907-195189... 30 0.52
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 29 0.91
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 29 0.91
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 28 2.1
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974... 26 6.4
07_03_1713 + 28939446-28939574,28939674-28940231,28940338-289404... 26 6.4
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +2
Query: 122 ETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFEKSTGTLTETH 286
+TV ++ R D FSV + ++GAT+ S+ +PD G +DVVLG + + +T+
Sbjct: 30 KTVGEYVLRKGD-FSVKITNWGATMMSVVLPDSKGNLADVVLGLDTIAEYVNDTN 83
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 101 DFGQHHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFE 256
D + TV + R D FS+ V ++GA I S+ +PD G DVVLG++
Sbjct: 26 DAAERKATTVGVYELRKGD-FSIRVTNWGAVIMSVVLPDSRGKLDDVVLGYD 76
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2
Query: 161 FSVSVISYGATIQSIQVPDKYGITSDVVLGFE 256
FS+ V ++GATI S+ +PD G +DVVLG++
Sbjct: 46 FSIRVTNWGATIMSVILPDSKGNLADVVLGYD 77
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 36.3 bits (80), Expect = 0.006
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 164 SVSVISYGATIQSIQVPDKYGITSDVVLGFE 256
+ + ++GATI S+ VPD +G +DVVLGF+
Sbjct: 15 TAKIAAWGATITSLIVPDAHGNLADVVLGFD 45
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 35.5 bits (78), Expect = 0.010
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 173 VISYGATIQSIQVPDKYGITSDVVLGFE 256
+ + GAT+ S+ VPD G+ DVVLGF+
Sbjct: 122 ITNVGATVTSLLVPDNNGVLGDVVLGFD 149
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 265 GYVNRNTPYLGNIVGRFANK 324
G N +PY G IVGR AN+
Sbjct: 198 GVPNGTSPYFGCIVGRVANR 217
>08_02_0632 +
19515234-19515374,19515489-19515656,19518907-19518993,
19519551-19519685,19519778-19519882,19519968-19520059,
19520147-19520252,19520320-19520424,19520516-19520929
Length = 450
Score = 29.9 bits (64), Expect = 0.52
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = +3
Query: 123 RRFQN-SHGGHLMASQCPSFHMGLPYSQFRYRTNTVSPVTLSWALRNRRVR*QKHTVLRE 299
R +QN S+ C PY F+Y T P + + LRN KH V
Sbjct: 89 RNYQNLSYAREEALKDCKKVEKDSPYYDFQYNTRRARPSIVHFQLRNLVWATTKHDVYTV 148
Query: 300 H 302
H
Sbjct: 149 H 149
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 247 GL*EIDGYVNRNTPYLGNIVGRFANKFGG 333
G +I YVN +T Y G +VGR AN+ G
Sbjct: 13 GYKDIGSYVN-DTTYFGALVGRVANRIAG 40
>03_01_0566 -
4184379-4184491,4184616-4184726,4184800-4184889,
4184996-4185113
Length = 143
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 71 IINMVTLNVDDFGQHHGETVSKFTWR 148
I ++VTL D QHHG++ KFT R
Sbjct: 82 IRSLVTLAFADLLQHHGQSARKFTTR 107
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 119 GETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFEKS 262
G T+ + S G ++ + +GA+ + ++ +YGIT++ V+ KS
Sbjct: 695 GSTLGWQKYVGSKGKAIGIDKFGASAPAGKIYQEYGITAENVIATAKS 742
>08_02_0260 +
14990324-14990916,14991055-14991245,14997427-14997495,
14998134-14999221
Length = 646
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 224 GITSDVVLGFEKSTGTLTETHR 289
G+ D +GF +TG L E+H+
Sbjct: 230 GLPQDAAVGFSAATGDLVESHQ 251
>07_03_1713 +
28939446-28939574,28939674-28940231,28940338-28940460,
28940676-28940912
Length = 348
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Frame = +2
Query: 71 IINMVTLNVDDF-------GQHHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYG 226
++N + LN+D F G H G TV + W D ++ +G + P YG
Sbjct: 75 MVNNIYLNLDAFHGDKSHGGVHDGTTVVLWEWCKGDNQCWKILPWGPEAYAPPPPPAYG 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,527,707
Number of Sequences: 37544
Number of extensions: 192436
Number of successful extensions: 427
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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