Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00324X
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   1.2  
SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)             28   1.6  
SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)                   27   2.9  
SB_24688| Best HMM Match : F5_F8_type_C (HMM E-Value=4.6e-14)          26   6.6  
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   6.6  
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)                   26   6.6  
SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)                     26   8.8  
SB_43296| Best HMM Match : DUF957 (HMM E-Value=4.3)                    26   8.8  
SB_8721| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.8  

>SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 349

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 89  KSPCLLFKTNDSSGHKQLRKQSYVMYAF 6
           K  CL+ + NDS GH + R ++ V+ +F
Sbjct: 208 KQACLVRRANDSQGHLEYRTETSVVSSF 235


>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
          Length = 332

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 173 RTLRSHQMPSM*IL-KPSLHDAVQNRQHSKSPCLLFKTNDSSGHK 42
           RTL   Q+P   I  KP ++ + +  QHS SP  L   N    HK
Sbjct: 189 RTLSKFQVPLKAIADKPKMYYSKKAPQHSLSPLALSNDNPKKHHK 233


>SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 204 IDCMVAPYEMTDTEKPSDALHVNFETVSP*CCPKSS 97
           I C    YE+    K  +  H+++   SP CCP  S
Sbjct: 331 IGCCCEEYEIFVNGKVHEQHHLSYNPCSPLCCPGGS 366


>SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)
          Length = 487

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 155 DGFSVSVISYGATIQSIQVPDKYGITSDVVLGFEKSTGTLTETHRT*GTLSADLP 319
           +G S+S +  GA I ++Q PDK      +V  + + TGTL       G +  D P
Sbjct: 417 EGRSISTV--GAHIDAVQ-PDKQDKVKVIVGDYRERTGTLINIDDKDGIIKMDRP 468


>SB_24688| Best HMM Match : F5_F8_type_C (HMM E-Value=4.6e-14)
          Length = 226

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 25  DCFLNCLWPLESFVLNNKHGDFEC*RFWTASWRD 126
           DC L CL       +N +HGD  C    T  ++D
Sbjct: 52  DCVLECLRDKACQSVNRRHGDSLCELIGTNKFKD 85


>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 150 HLMASQCPSFHMGLPYSQFRYRTNTVSPVTLSWALRNRRVR 272
           H     C SF+   PYS+F   T +       W LRN +++
Sbjct: 320 HTAEVNCLSFN---PYSEFILATGSADKTVALWDLRNLKLK 357


>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
          Length = 848

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 11  RTSHRIVFLIVYGRLNHSF*IINMV 85
           R+SHR+ FL+V+G   H   II ++
Sbjct: 76  RSSHRLPFLVVFGYFLHEKVIIMVI 100


>SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)
          Length = 766

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 50  RLNHSF*IINMVTLNVDDFGQHHGETVSKFTWRASDG 160
           RL H+F  I  V L + +FGQ HG      + + + G
Sbjct: 3   RLFHAFVAILCVLLLLQEFGQAHGPASRSLSRKETSG 39


>SB_43296| Best HMM Match : DUF957 (HMM E-Value=4.3)
          Length = 447

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 135 NSHGGHLMASQCPSFHMGLPYSQFRYRTNTVSPVTLSWALRN 260
           +S  G   AS     H+GLPYS  +  T T  P  L   LR+
Sbjct: 336 DSDEGSGNASPQSYIHLGLPYSISQLLTATTVPYELPMYLRS 377


>SB_8721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 77  NMVTLNVDDFGQHHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLG 250
           N+ T+N+DD+ +HH E +   +          ++ Y    + + + D    TSDV  G
Sbjct: 33  NLYTINLDDYFKHHPEHLHHKSHMNDSNKKRMLLKYETEDEDMLLRD--ARTSDVTYG 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,249
Number of Sequences: 59808
Number of extensions: 230360
Number of successful extensions: 457
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)