Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00324X
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...    35   0.012
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...    35   0.012
Z70284-13|CAB54280.1|  639|Caenorhabditis elegans Hypothetical p...    31   0.20 
Z70284-12|CAB54278.1|  549|Caenorhabditis elegans Hypothetical p...    31   0.20 
Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical pr...    30   0.35 
U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z81097-15|CAB03172.1|  412|Caenorhabditis elegans Hypothetical p...    27   4.3  
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81097-20|CAB03178.1|  417|Caenorhabditis elegans Hypothetical p...    26   7.5  
AL023833-1|CAA19477.1|  417|Caenorhabditis elegans Hypothetical ...    26   7.5  
AF116530-1|AAD05571.1|  417|Caenorhabditis elegans synthetic mul...    26   7.5  
Z83239-6|CAB05803.1|  324|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z78415-11|CAL36495.1|  435|Caenorhabditis elegans Hypothetical p...    25   10.0 
Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z72507-14|CAA96630.2|  383|Caenorhabditis elegans Hypothetical p...    25   10.0 
AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical ...    25   10.0 

>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 158 GFSVSVISYGATIQSIQVPDKYGITSDVVLGFE 256
           G + +++ +GAT+  +  PDK G   D+VLGF+
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFD 45


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 158 GFSVSVISYGATIQSIQVPDKYGITSDVVLGFE 256
           G + +++ +GAT+  +  PDK G   D+VLGF+
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFD 45


>Z70284-13|CAB54280.1|  639|Caenorhabditis elegans Hypothetical
           protein K07F5.13c protein.
          Length = 639

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 182 YGATIQSIQVPDKYGITSDVVL--GFEKSTGTLTETHRT*GTLSADLPTSS 328
           +G+T Q+   P  +G T+      G    TGT T T  T GTL    PT+S
Sbjct: 40  FGSTAQASSTPSLFGTTNTSTPSGGLFGKTGTSTTTTSTAGTLFGAAPTTS 90


>Z70284-12|CAB54278.1|  549|Caenorhabditis elegans Hypothetical
           protein K07F5.13b protein.
          Length = 549

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 182 YGATIQSIQVPDKYGITSDVVL--GFEKSTGTLTETHRT*GTLSADLPTSS 328
           +G+T Q+   P  +G T+      G    TGT T T  T GTL    PT+S
Sbjct: 40  FGSTAQASSTPSLFGTTNTSTPSGGLFGKTGTSTTTTSTAGTLFGAAPTTS 90


>Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical
           protein T26H2.3 protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +2

Query: 161 FSVSVISYGATIQSIQVPDKYGITSDVVLGFEKSTGTLTET 283
           F +++ +  +T ++ +VP K GI + V + F+K T  LTET
Sbjct: 75  FYLNIDALQSTCRNSKVPSKLGIPNRVEIIFDKLTEELTET 115


>U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical
           protein C15B12.8 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 161 FSVSVISYGATIQSIQVPDKYGITSDVVLGFEKSTG 268
           F    I+ G TIQ  +    YG T +V++  + STG
Sbjct: 154 FQEEFITLGGTIQDNEPVISYGETDNVIVNVKTSTG 189


>Z81097-15|CAB03172.1|  412|Caenorhabditis elegans Hypothetical
           protein K07A1.11 protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 147 GHLMASQCPSFHMGLPYSQFRYRTNTVSPVTLSWALRNRRVR*QKHTVLREHCRPICQ 320
           GH     C +F+   P+S++   T +V      W +RN R   +K   L+ H   I Q
Sbjct: 262 GHTAEVNCITFN---PFSEYILATGSVDKTVALWDMRNMR---KKMYTLKHHNDEIFQ 313


>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
           protein C16C10.3 protein.
          Length = 1032

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 83  VTLNVDDFGQHHGETVSKFTWRASDGFSV 169
           VTL +DDF +   + VSK + R  D + V
Sbjct: 163 VTLTIDDFPKEEWKFVSKLSRRKDDSYLV 191


>Z81097-20|CAB03178.1|  417|Caenorhabditis elegans Hypothetical
           protein K07A1.12 protein.
          Length = 417

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 150 HLMASQCPSFHMGLPYSQFRYRTNTVSPVTLSWALRNRRVR 272
           H     C +F+   PYS+F   T +       W LRN R++
Sbjct: 264 HSAEVNCLAFN---PYSEFILATGSADKTVALWDLRNLRMK 301


>AL023833-1|CAA19477.1|  417|Caenorhabditis elegans Hypothetical
           protein K07A1.12 protein.
          Length = 417

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 150 HLMASQCPSFHMGLPYSQFRYRTNTVSPVTLSWALRNRRVR 272
           H     C +F+   PYS+F   T +       W LRN R++
Sbjct: 264 HSAEVNCLAFN---PYSEFILATGSADKTVALWDLRNLRMK 301


>AF116530-1|AAD05571.1|  417|Caenorhabditis elegans synthetic
           multivulva protein LIN-53 p48 protein.
          Length = 417

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 150 HLMASQCPSFHMGLPYSQFRYRTNTVSPVTLSWALRNRRVR 272
           H     C +F+   PYS+F   T +       W LRN R++
Sbjct: 264 HSAEVNCLAFN---PYSEFILATGSADKTVALWDLRNLRMK 301


>Z83239-6|CAB05803.1|  324|Caenorhabditis elegans Hypothetical
           protein T09F5.10 protein.
          Length = 324

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 153 LMASQCPSFHMGLPYSQFRYRTNTVSPVTLSWALRNR 263
           L   Q P F +GL ++   YRT  V  +  S A+  R
Sbjct: 71  LKEGQKPLFFLGLGWTGPEYRTRAVMELQASMAMEER 107


>Z78415-11|CAL36495.1|  435|Caenorhabditis elegans Hypothetical
           protein C17G1.3b protein.
          Length = 435

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +2

Query: 173 VISYGATIQSIQVPDKY 223
           +IS+G+ I+S+ +PD+Y
Sbjct: 206 IISFGSNIKSMDMPDEY 222


>Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical
           protein C17G1.3a protein.
          Length = 530

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +2

Query: 173 VISYGATIQSIQVPDKY 223
           +IS+G+ I+S+ +PD+Y
Sbjct: 301 IISFGSNIKSMDMPDEY 317


>Z72507-14|CAA96630.2|  383|Caenorhabditis elegans Hypothetical
           protein F17C11.8 protein.
          Length = 383

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 98  DDFGQHHGETVSKFTW-RASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFEKSTGTL 274
           DDF + + + V + TW R+S G S S     + ++S+ +    GI   +    +K+  T+
Sbjct: 116 DDFFKKYEDAVRRKTWQRSSSGSSSSGSRASSNLRSVGIS---GIERRLAENHQKTHETI 172

Query: 275 TE 280
           T+
Sbjct: 173 TQ 174


>AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical
           protein H34P18.1 protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 74  INMVTLNVDDFGQHHGETVSKFTWRASDGFSVSVISYGATI 196
           + M+ + V DFG    E +  F W  SD +     +YG  +
Sbjct: 75  VTMLLIAVCDFGCSIAELLKLFLWSYSDKYISYPTAYGRLV 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,348,937
Number of Sequences: 27780
Number of extensions: 173987
Number of successful extensions: 442
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)