Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00324X
(333 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47800.1 68416.m05207 aldose 1-epimerase family protein simil... 40 5e-04
At3g17940.1 68416.m02284 aldose 1-epimerase family protein simil... 39 7e-04
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 32 0.11
At1g04420.1 68414.m00433 aldo/keto reductase family protein Simi... 29 1.0
At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containi... 28 1.4
At3g15030.2 68416.m01902 TCP family transcription factor, putati... 28 1.4
At3g15030.1 68416.m01901 TCP family transcription factor, putati... 28 1.4
At1g58225.1 68414.m06614 expressed protein 28 1.4
At5g25900.1 68418.m03075 ent-kaurene oxidase, putative (GA3) / c... 27 2.4
At5g65600.1 68418.m08253 legume lectin family protein / protein ... 26 5.5
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 26 5.5
At5g48240.1 68418.m05960 hypothetical protein 25 9.5
At3g60750.1 68416.m06796 transketolase, putative strong similari... 25 9.5
At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing... 25 9.5
At2g44970.1 68415.m05598 lipase-related contains weak similarity... 25 9.5
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ... 25 9.5
>At3g47800.1 68416.m05207 aldose 1-epimerase family protein similar
to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
from [Acinetobacter calcoaceticus]; contains Pfam
profile PF01263 Aldose 1-epimerase
Length = 358
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 140 TWRASDG-FSVSVISYGATIQSIQVPDKYGITSDVVLGFEKSTGTLTET 283
T++ + G SV+ +YGA + S+ +PD++G DVVLGF+ G +T
Sbjct: 33 TYKLTRGSLSVTFTNYGAVMTSLLLPDRHGKQDDVVLGFDTVDGYKNDT 81
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +1
Query: 247 GL*EIDGYVNRNTPYLGNIVGRFANKFGG 333
G +DGY N +T Y G IVGR AN+ GG
Sbjct: 70 GFDTVDGYKN-DTTYFGAIVGRVANRIGG 97
>At3g17940.1 68416.m02284 aldose 1-epimerase family protein similar
to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
from [Acinetobacter calcoaceticus]; contains Pfam
profile PF01263 Aldose 1-epimerase
Length = 341
Score = 39.1 bits (87), Expect = 7e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 167 VSVISYGATIQSIQVPDKYGITSDVVLGFE 256
V + +YG TI S+ VPDK G DVVLGF+
Sbjct: 21 VKISNYGTTITSLSVPDKNGKLGDVVLGFD 50
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 247 GL*EIDGYVNRNTPYLGNIVGRFANK 324
G +D YV PY G IVGR AN+
Sbjct: 48 GFDSVDPYVKGLAPYFGCIVGRVANR 73
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 164 SVSVISYGATIQSIQVPDKYGITSDVVLGFE 256
+V ++GA+I S+ PDK G D+VLG++
Sbjct: 171 TVKFTNWGASIISLHFPDKNGKMDDIVLGYD 201
>At1g04420.1 68414.m00433 aldo/keto reductase family protein Similar
to SP|Q46933 Tas protein {Escherichia coli}, Babesia
aldo-keto reductase SP|P40690; contains Pfam profile
PF00248: oxidoreductase, aldo/keto reductase family
Length = 412
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 188 ATIQSIQVPDKYGITS-DVVLGFEKSTGTLTET 283
ATIQ ++V KYG+T ++ LGF + +T T
Sbjct: 335 ATIQYVEVAKKYGLTPVELALGFVRDRPFVTST 367
>At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 574
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 113 HHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFEKS 262
H +TV F A G S+ISY + ++ V +YG S +V E+S
Sbjct: 62 HEAQTV--FKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQS 109
>At3g15030.2 68416.m01902 TCP family transcription factor, putative
similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
Length = 420
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 128 PSLHDAVQNRQHSKSPCLLFKTNDSSGHKQLRKQSY 21
PS H+ + N H P LL +TN + +L QS+
Sbjct: 198 PSNHNLMHNYHHQHPPDLLSRTNSQNQDLRLSLQSF 233
>At3g15030.1 68416.m01901 TCP family transcription factor, putative
similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
Length = 420
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 128 PSLHDAVQNRQHSKSPCLLFKTNDSSGHKQLRKQSY 21
PS H+ + N H P LL +TN + +L QS+
Sbjct: 198 PSNHNLMHNYHHQHPPDLLSRTNSQNQDLRLSLQSF 233
>At1g58225.1 68414.m06614 expressed protein
Length = 143
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 195 YSQFRYRTNTVSPVTLSWALR 257
++QFRY +TV+P + SW R
Sbjct: 103 FTQFRYSISTVAPTSRSWTSR 123
>At5g25900.1 68418.m03075 ent-kaurene oxidase, putative (GA3) /
cytochrome P450 identical to GA3 [Arabidopsis thaliana]
GI:3342249; similar to ent-kaurene oxidase [Cucurbita
maxima] GI:11934675; contains Pfam profile PF00067:
Cytochrome P450
Length = 509
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 119 GETVSKFTWRASDGFSVSVISYGATIQSI 205
G V +F W+ DG +V +YG T Q +
Sbjct: 469 GRLVQEFEWKLRDGEEENVDTYGLTSQKL 497
>At5g65600.1 68418.m08253 legume lectin family protein / protein
kinase family protein contains Pfam domains PF00138:
Legume lectins alpha domain, PF00139: Legume lectins
beta domain and PF00069: Protein kinase domain
Length = 675
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 227 ITSDVVLGFEKSTGTLTETHR 289
+ SDV+ GF + GT TE HR
Sbjct: 243 LPSDVMFGFIAAAGTNTEEHR 263
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 155 DGFSVSVISYGATIQSIQVPDKYGITSDVVLGFEK 259
DGF + G T +++P G+T+ + LGF++
Sbjct: 98 DGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDE 132
>At5g48240.1 68418.m05960 hypothetical protein
Length = 339
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 107 GQHHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYG 226
G+ HGE S T A+DG + I++ A ++ + D G
Sbjct: 110 GEDHGEIESGITKFATDGCNAFKIAFKAIMKKTKGDDTLG 149
>At3g60750.1 68416.m06796 transketolase, putative strong similarity
to transketolase 1 [Capsicum annuum] GI:3559814;
contains Pfam profiles PF02779: Transketolase, pyridine
binding domain, PF02780: Transketolase, C-terminal
domain, PF00456: Transketolase, thiamine diphosphate
binding domain
Length = 741
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 122 ETVSKFTWR---ASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFEKS 262
E S F W G S+ + S+GA+ + + ++GIT + V+ KS
Sbjct: 690 EAASTFGWGKIVGGKGKSIGINSFGASAPAPLLYKEFGITVEAVVDAAKS 739
>At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein similar to
Ran binding protein [Homo sapiens] GI:624232; contains
Pfam profile PF00638: RanBP1 domain
Length = 465
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 116 HGETVSKFTWRASDGFSVSVISYGATIQ 199
H + + FT AS GFS S S+G Q
Sbjct: 244 HSSSKNAFTGLASTGFSASSFSFGLVPQ 271
>At2g44970.1 68415.m05598 lipase-related contains weak similarity to
lipase [Pseudomonas aeruginosa] gi|3550950|gb|AAC34733.
Length = 503
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 244 PGL*EIDGYVNRNTPYLGNIVGRFANKFGG 333
P L E Y+ + T YLG+ ++ ++GG
Sbjct: 51 PALNEAASYITQATSYLGSCFSDYSVEYGG 80
>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain; ESTs gb|T44428 and gb|AA395440 come from this
gene
Length = 1218
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 116 HGETVSKFTWRAS-DGFSVSVISYGATIQSIQVPDKYGITSDVV 244
HG+ S F + D FS+ I G+TI + +P K I +D V
Sbjct: 916 HGKYDSGFGFGFGFDDFSIKPIKTGSTISNDFLPPKLSIFADSV 959
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,777,952
Number of Sequences: 28952
Number of extensions: 158438
Number of successful extensions: 346
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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