Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00323
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 31 1.2
07_01_0976 + 8226194-8226473,8227116-8227291,8227366-8227486,822... 30 1.6
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 30 2.1
05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53... 29 2.8
03_02_0368 + 7840665-7841975 29 2.8
02_02_0497 + 10961079-10963824,10964182-10964282,10964759-109648... 29 2.8
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 29 3.7
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 3.7
11_06_0344 + 22540436-22540737,22541304-22543545 28 6.5
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420... 28 6.5
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 8.6
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 28 8.6
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 28 8.6
01_02_0075 + 10873789-10873871,10873883-10874420 28 8.6
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 116 KVHCSAARVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 250
K +AA VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>07_01_0976 +
8226194-8226473,8227116-8227291,8227366-8227486,
8228684-8228757,8229269-8229332,8229969-8230039,
8230279-8230368,8230491-8230661,8231668-8231739
Length = 372
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 219 WCAQTSTKPGNRLRSIPPAMLMPRQL*SVPWSAIPPRSNRVLRNVP 356
W A +T P +R PP PR L +P S+ PP SN +P
Sbjct: 6 WLAAAATTP---VRRSPPLPATPRALLRLPASSFPPWSNCAKSGLP 48
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 278 AYASTTLISAV--VRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATWL 445
+Y S L+S V R K+S++ + C L C S CG F T CA +L
Sbjct: 290 SYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYL 348
>05_01_0079 +
531617-531734,531987-532059,532152-532261,532400-532543,
532628-532736,532836-533182,533260-533333,533478-533782,
534168-534294,534385-534414,534589-534837
Length = 561
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 618 LEHCIAPFLDRCDADDDHRVTLA--EWGKCLELD 713
L H + FL CD+ D H L+ EW L+LD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355
>03_02_0368 + 7840665-7841975
Length = 436
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 236 NETWQSVAKYTASDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVA 406
+E W+ A + A+T + TT K S+TE E L L+AR L +P A
Sbjct: 121 SEQWRLAAADLSRRLAAATRTRDEALEETTRLKHSLTE-LEMKLARLEARVLPTPTA 176
>02_02_0497 +
10961079-10963824,10964182-10964282,10964759-10964800,
10966918-10966986
Length = 985
Score = 29.5 bits (63), Expect = 2.8
Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Frame = -1
Query: 418 ASPACDGGSQTSRFQCSQAFLGTFRNTRF--ERGGIADHGTDQSCRGISIAGGILRNRLP 245
A+ A GG F A R + ER DH S +A G+ NRL
Sbjct: 33 AAAATSGGGAPDVFDAVPALDDRMRCSALLRERAVGGDHYGCTSLLRWMLARGLRPNRLA 92
Query: 244 GFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFADTCCAA 125
V + A C G L HG++V V +AD A
Sbjct: 93 LAAAVKSSSALPDCRGGAALGRCLHGLAVKVGYADGAVVA 132
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +1
Query: 178 LHQGLSLRDRLQTHGVHKLQRNLAIGCEVYRQRC----LCLDNSDQCRGPQYH--HVQIE 339
L G R +L T H+L+ N A G EV C LCL S CRG H V+ +
Sbjct: 625 LPAGCPCRGQLLTMD-HRLEEN-ASGGEVGPLGCWPGGLCLSRSIGCRGAISHVDQVKRQ 682
Query: 340 YYGTCREMP 366
+ CR++P
Sbjct: 683 RHAGCRDLP 691
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 272 SDAYASTTLISAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 418
S + S +I A+ RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 388 SASLPSMEMIPAI-RNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 326 TFKSSITERAEKCLTALKARCLTSP 400
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>03_05_0469 +
24640925-24641081,24641292-24641644,24641870-24642043,
24642382-24642506,24643011-24643059,24643741-24643899,
24644037-24644219
Length = 399
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = -1
Query: 616 AISGALMGNSS*RDTNLSLV*ASRSHHFHIAALAQRA*GL--IPPPAPSSGNEGSALYVQ 443
++ G++MG S ++ + L +RSH I A G+ P P+ EGS + +
Sbjct: 58 SVQGSVMGASRMDNSYVVLSKQNRSHSHGIPPRPPSA-GIPRAEPNQPTRAMEGSYIVLP 116
Query: 442 PCRA*C*KASPACDGGSQTS 383
P A K S + GG+Q S
Sbjct: 117 PAAASIYKTSASEGGGAQLS 136
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 102 KTLA*KSTAAQHVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 245
+T A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 178 LHQGLSLRDRLQTH-GVHKLQRNLAIGCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYGTC 354
+H+ L+ D + V + N+ + + R C D+ QCRG + + E G C
Sbjct: 213 VHEVLNTNDERRIDVDVCPMCTNVRLVFDCTRDGCRRKDSWAQCRGCFFCVARCETCGGC 272
Query: 355 REMPDCTESEM--SDFPRRMRDWL 420
++ + +E+E+ SDF M WL
Sbjct: 273 IDLEELSETELACSDF-LCMECWL 295
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 697 LPHSARVTRWSSSASQRSRNGAMQCSRAISGA 602
LP S +V RWSSSA+ +R A R + A
Sbjct: 15 LPASLQVGRWSSSAAMSARPVAFSLRRPVLAA 46
>01_02_0075 + 10873789-10873871,10873883-10874420
Length = 206
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 474 EDGAGGGIKPHARWANAAI 530
E+G GGG P RW AA+
Sbjct: 139 EEGTGGGEAPDLRWGEAAV 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,560,277
Number of Sequences: 37544
Number of extensions: 472121
Number of successful extensions: 1529
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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