Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00323
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45290.1 68415.m05637 transketolase, putative strong similari...    31   1.0  
At5g08580.1 68418.m01021 calcium-binding EF hand family protein ...    29   2.4  
At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containi...    29   4.1  
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II...    28   5.5  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    28   5.5  
At3g22150.1 68416.m02796 pentatricopeptide (PPR) repeat-containi...    28   5.5  
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr...    28   7.2  
At3g17200.1 68416.m02194 hypothetical protein                          27   9.5  
At2g42380.2 68415.m05245 bZIP transcription factor family protein      27   9.5  
At2g42380.1 68415.m05244 bZIP transcription factor family protein      27   9.5  

>At2g45290.1 68415.m05637 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
 Frame = -1

Query: 496 IPPPAPSSGNEGSALYVQPCRA*C*KASPACDGGSQ---TSRFQCSQAFLGTFRNTRFE- 329
           +P   P S  + +    Q C     KA P   GGS    +S     +AF G F+    E 
Sbjct: 421 LPTYTPDSPGDATRNLSQQCLNALAKAVPGFLGGSADLASSNMTMLKAF-GNFQKATPEE 479

Query: 328 ---RGGIADHGTDQSCRGISIAGGILRNRLPGFVEVCA 224
              R G+ +HG    C GI++         PGF+  CA
Sbjct: 480 RNLRFGVREHGMGAICNGIAL-------HSPGFIPYCA 510


>At5g08580.1 68418.m01021 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 391

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +3

Query: 555 QTNDRFVSRHELFPIRAPLMALEHCIAP-----FLDRCDADDDHRVTLAE 689
           + +D ++S  EL PI + +   EH  A       + + D+D D R+TLAE
Sbjct: 313 KNDDGYLSDVELLPIISKIHPTEHYYAKQQADYIISQADSDKDRRLTLAE 362


>At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to Chain A, Human Mrf-2 Domain
           [Homo sapiens] GI:14278238; contains Pfam profile
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 398

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 602 SNGEQLVTGHESIIGLSVQIAPFPYSGIGPTSVRFDSASRSI 477
           +NGE  + G   I+  SV+  P  + G G    R DSA+R++
Sbjct: 198 NNGELNLPGSTLILSSSVEKEPSSHQGSGSGRARRDSAARAM 239


>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 613

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 328 RGGIADHGTDQSCRGISIAGGILRNRLPG 242
           RG  ADHG + S  G+S+ GG  R    G
Sbjct: 68  RGSEADHGNNISDGGVSVRGGYQRKHRRG 96


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 328 RGGIADHGTDQSCRGISIAGGILRNRLPG 242
           RG  ADHG + S  G+S+ GG  R    G
Sbjct: 68  RGSEADHGNNISDGGVSVRGGYQRKHRRG 96


>At3g22150.1 68416.m02796 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 820

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 238 RNLAIGCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEMSDFPRRMRDW 417
           +NL  G  V+     CL NS +      H+  +  Y +C   PDC E    D  R++ D 
Sbjct: 121 KNLKAGKAVHCHLIRCLQNSSRV----VHNSLMNMYVSCLNAPDCFE---YDVVRKVFD- 172

Query: 418 LFNIMR-DMAERRELTPHYLKMEREAES 498
             N+ R ++     L   Y+K  R AE+
Sbjct: 173 --NMRRKNVVAWNTLISWYVKTGRNAEA 198


>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
           protein (PEX10) identical to zinc-binding peroxisomal
           integral membrane protein GI:4337011 from [Arabidopsis
           thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 317 NTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTSC-ATWLN 448
           N +T  S+ TE   KC   L  R   +   CG  F  SC   W N
Sbjct: 312 NWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCN 356


>At3g17200.1 68416.m02194 hypothetical protein
          Length = 310

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 152 NEHGDAMCNCIKDCPYET-DSRRMVCTNFNETWQSVAK 262
           N+H +  C+ + D P ET D    VCT   + W+ +AK
Sbjct: 175 NQHVNTSCS-LCDEPMETRDHLFFVCTYSRKVWEDIAK 211


>At2g42380.2 68415.m05245 bZIP transcription factor family protein
          Length = 321

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 126 AAQHVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRLRSI 266
           ++Q +S  ST T T   TA+ TV      D +   ++++ GN  RSI
Sbjct: 19  SSQKLSPFSTPTATAVATATTTVQNPSWVDEFLDFSASRRGNHRRSI 65


>At2g42380.1 68415.m05244 bZIP transcription factor family protein
          Length = 310

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 126 AAQHVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRLRSI 266
           ++Q +S  ST T T   TA+ TV      D +   ++++ GN  RSI
Sbjct: 19  SSQKLSPFSTPTATAVATATTTVQNPSWVDEFLDFSASRRGNHRRSI 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,499,864
Number of Sequences: 28952
Number of extensions: 333318
Number of successful extensions: 967
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)