Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00322
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   2.2  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   2.2  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   3.0  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    24   3.9  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    24   5.2  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    23   6.9  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    23   9.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    23   9.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    23   9.1  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    23   9.1  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -3

Query: 284 FFFNVDVQLVETLQIIFMLSLAQFYVLR*PCQIS*YFY*FQH*FTIHLNSYNLC 123
           FFF   +Q+     I+  LS     +L  PC I  +   F H FTI    Y+LC
Sbjct: 27  FFF---LQMTPFYSILCFLSFFAL-LLHLPCSIYSHTLHFFHHFTIACYHYSLC 76


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 146 HLNSYNLCHINSKSVTIHLDG 84
           HL  +  CH N K  + H DG
Sbjct: 69  HLKIHKRCHTNVKPFSCHYDG 89


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 258 SGNITNNLHVVTSAVLCFTVALSDFMIFLLIPTL 157
           S N+T+NLH +     C     S  ++ ++IP++
Sbjct: 184 SNNVTSNLHHIRIISKCSLKLKSMVLVSMIIPSI 217


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 22  WKTSHSAVNALNSSQIYK*NPPS 90
           W+T  S   AL ++ +YK  PP+
Sbjct: 255 WETYQSRKAALTANDVYKMQPPN 277


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 228 VTSAVLCFTVALSDFMIFLLIPTLIH 151
           VT  ++CF +A+ D ++  L P L H
Sbjct: 111 VTQRIICFLLAI-DVLVVFLSPILRH 135


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 207 FTVALSDFMIFLLIPTLIHYTFE*LQFMSH 118
           F+VA++ F+I L   TL+ YT    +F+ H
Sbjct: 182 FSVAITFFIIGLFTWTLVEYTMH--RFLFH 209


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 13   SP*WKTSHSAVNALNSSQIYK 75
            +P +K SH  V  +NSS  Y+
Sbjct: 1916 TPNFKPSHELVQLINSSPFYR 1936


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -3

Query: 95  HLDGGFYLYICDELSAFTAEWLV 27
           H   G+++Y C  +      WLV
Sbjct: 459 HFHWGYHIYACAVIGLLDPSWLV 481


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 6   STFSVMENQPLCGKCA*FITNI-*IKSPIEMYSNTFRIDVT*IVTIQMYSELMLELIKIS 182
           ST ++   +PLC  C  F+T    IK+P  + +    I    + T    SEL+L++++ S
Sbjct: 603 STLTLHSLEPLCEFCVSFLTQANYIKNPY-LRAKLAEILYFGVQTHVGRSELLLDVVRTS 661


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 249 ITNNLHVVTSAVLCFTVALSDFMIFLLIPTLIHYTFE*LQFMS 121
           IT  +   T   + FT+ + DF++ ++I  ++   F  +Q  S
Sbjct: 546 ITTKIEYFTICAIVFTMTVVDFVVGIVIGIIMACVFFVIQASS 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,025,661
Number of Sequences: 5004
Number of extensions: 15286
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)